BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11792 (UTR included)
(1420 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01022B1A02 656 0.0
>BF01022B1A02
Length = 802
Score = 656 bits (331), Expect = 0.0
Identities = 334/335 (99%)
Strand = Plus / Plus
Query: 548 ggtactaacccaaggaagtttacgaaggagatcgaacatagggcctattcggacagagtc 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 ggtactaacccaaggaagtttacgaaggagatcgaacatagggcctattcggacagagtc 163
Query: 608 ttcgctaatcaaacagtcatttatctgtgaaacaccgatgggagttcgtcagaacccttg 667
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 164 ttcgctaatcaaacagtcatttatctgtgaaacaccgatgggagttcgtcaaaacccttg 223
Query: 668 gacaccaaccaaaagacgaggacccatcgctgcggaaactgctagtcctggaccagctgt 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gacaccaaccaaaagacgaggacccatcgctgcggaaactgctagtcctggaccagctgt 283
Query: 728 cgtttctcttccttctcttataggtaaacctccgccggaatctagaaagactagagcacc 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cgtttctcttccttctcttataggtaaacctccgccggaatctagaaagactagagcacc 343
Query: 788 agcgttcacgtttggacagaaattggaagctgcgggtaaggataagagtggccccggtcc 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agcgttcacgtttggacagaaattggaagctgcgggtaaggataagagtggccccggtcc 403
Query: 848 cgcttcttacaacacggaaggcatgacagctaaag 882
|||||||||||||||||||||||||||||||||||
Sbjct: 404 cgcttcttacaacacggaaggcatgacagctaaag 438
Score = 359 bits (181), Expect = 8e-99
Identities = 198/203 (97%), Gaps = 3/203 (1%)
Strand = Plus / Plus
Query: 881 agttgaattgtatagag---aaaaaaaatctactgacatctgacaaggctgcttgactaa 937
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agttgaattgtatagagtaaaaaaaaaatctactgacatctgacaaggctgcttgactaa 659
Query: 938 tatagtccgagtagtgattgaaagcgttgccattctcataaaataacaaagatctatcaa 997
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 660 tatagtccgagtagtgattgaaagcgttgccattcccataaaataacaaagatctatcaa 719
Query: 998 tgttaaagatgaataaagaataccaatagatcaaaacaaatgtatactaatagtatattt 1057
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 720 tgttaaagatgaataaagaataccaatacatcaaaacaaatgtatactaatagtatattt 779
Query: 1058 ttgacaatgacactatgtttgca 1080
|||||||||||||||||||||||
Sbjct: 780 ttgacaatgacactatgtttgca 802
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 223,949
Number of extensions: 5412
Number of successful extensions: 5412
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5411
Number of HSP's successfully gapped: 2
Length of query: 1420
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1403
Effective length of database: 8,119,229
Effective search space: 11391278287
Effective search space used: 11391278287
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)