BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11813 (UTR included)
(2014 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01054B2C07 686 0.0
BF01017B2B06 648 0.0
BF01059A1E02 646 0.0
>BF01054B2C07
Length = 794
Score = 686 bits (346), Expect = 0.0
Identities = 352/354 (99%)
Strand = Plus / Plus
Query: 544 aggagatcgtgactcttgcgggctactctcgccgcgtgtccgacatgctggtcgtgttcg 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggagatcgtgactcttgcgggctactctcgccgcgtgtccgacatgctggtcgtgttcg 500
Query: 604 gtgaggtcgcgagaggtcgttgtgtgagagccgttcacgtcgctgctccgaacaccaacg 663
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgaggtcgcgcgaggtcgttgtgtgagagccgttcacgtcgctgctccgaacaccaacg 560
Query: 664 gcttccaggtcaccttcaaggacggccagccggtaccgcagggtaaaatttcctatacga 723
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttccaggtcaccttcaaagacggccagccggtaccgcagggtaaaatttcctatacga 620
Query: 724 cggatctctctatacttttacggaatgtgccgatagtgaccccgtcatgtgacgtggtcg 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggatctctctatacttttacggaatgtgccgatagtgaccccgtcatgtgacgtggtcg 680
Query: 784 ctagcggggtgaccctggaacttcgccccgggacacatctacttattgtaggacccaacg 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctagcggggtgaccctggaacttcgccccgggacacatctacttattgtaggacccaacg 740
Query: 844 gatgcgggaagtccagtctgttccgtatcatctctggtctgtggccagtgtttg 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gatgcgggaagtccagtctgttccgtatcatctctggtctgtggccagtgtttg 794
>BF01017B2B06
Length = 496
Score = 648 bits (327), Expect = 0.0
Identities = 414/442 (93%), Gaps = 2/442 (0%)
Strand = Plus / Minus
Query: 1533 cgggatatatacagcgtgtagcgcgcggttgtacatatgtgataaggacatatacaggac 1592
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
Sbjct: 496 cgggatatatacagcgtgtagcgcgcggttgtccatatgtgataaggacatatacggggc 437
Query: 1593 gttcactacaatagtgagctgatgattgtgatgataatatagttttgtattgaaagttat 1652
|||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 436 gttccctccaatagtgagctgatgattgggatgataatatagttttgtattgaaagttat 377
Query: 1653 ttagtttattgtaagtgaga--caggcgacgccgtgttgacaatccgatccaaatataac 1710
||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct: 376 ttagtttattgtaagtgggattcaggggacgccgtgttgacaatccgatccaaatataac 317
Query: 1711 agtctcgttgttcactttgtaattatagcatcctcctaccacaatggcctgatacattgt 1770
||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |||
Sbjct: 316 agtctcgttgttccctttgtaattatagcatcctcctgccccattggcctgatacaatgt 257
Query: 1771 catttcgtaaattctttttaaaatttcttttatatttaacagtttgtatattttttggaa 1830
||||| ||||||| | |||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 256 catttggtaaattttatttaaaattttttttatatttaccagtttgtatattttttggaa 197
Query: 1831 tcttttttcttgtagttacaacaaaatggctgtcagaaattttaatacatatctttgtgt 1890
|||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct: 196 tctttttttttgtagttccaacaaaagggctgtcagaaattttaatacatatctttgggg 137
Query: 1891 gttaatcacgtgttgtgttttgtttgattgaattgagacttaaagtgtaaagtgacgcta 1950
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 136 gttaatcacgggttgtgttttgtttgattgaattgggacttaaagtgtaaagtgacgcta 77
Query: 1951 ggggtgtgataaaataaagggg 1972
||||||||||| ||||||||||
Sbjct: 76 ggggtgtgatataataaagggg 55
>BF01059A1E02
Length = 334
Score = 646 bits (326), Expect = 0.0
Identities = 329/330 (99%)
Strand = Plus / Plus
Query: 1103 cgctcacatcctgcgcgtggtgcgcttggacgcgtgtgcggcgcggcacggaggcctacg 1162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgctcacatcctgcgcgtggtgcgcttggacgcgtgtgcggcgcggcacggaggcctacg 60
Query: 1163 ggccgtgcgcgactggaagagcaccctctcagggggagagaaacagagagtcgcctgcgc 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggccgtgcgcgactggaagagcaccctctcagggggagagaaacagagagtcgcctgcgc 120
Query: 1223 cagaatgttttaccacaggccggtgtacgcgttgctggacgagtgcacgagcgccgtttc 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagaatgttttaccacaggccggtgtacgcgttgctggacgagtgcacgagcgccgtttc 180
Query: 1283 catggagacggaagtggtgatgtacgaggaggcggtcaaggagggaatcacgctgctgtc 1342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 catggagacggaagtggtgatgtacgaggaggcggtcaaggagggaatcacgctgctgtc 240
Query: 1343 cataacacaccgaccgagtgtctggaaatatcacacccacgtgctggaattcgacggaac 1402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cataacacaccgaccgagtgtctggaaatatcacacccacgtgctggaattcgacggaac 300
Query: 1403 cggaaattggtcgttcaggcccttggagaa 1432
|||||||||||||||||| |||||||||||
Sbjct: 301 cggaaattggtcgttcagacccttggagaa 330
Score = 260 bits (131), Expect = 8e-69
Identities = 137/139 (98%)
Strand = Plus / Plus
Query: 222 cgctcacatcctgcgcgtggtgcgcttggacgcgtgtgcggcgcgacacggaggcctgcg 281
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 1 cgctcacatcctgcgcgtggtgcgcttggacgcgtgtgcggcgcggcacggaggcctacg 60
Query: 282 ggccgtgcgcgactggaagagcaccctctcagggggagagaaacagagagtcgcctgcgc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggccgtgcgcgactggaagagcaccctctcagggggagagaaacagagagtcgcctgcgc 120
Query: 342 cagaatgttttaccacagg 360
|||||||||||||||||||
Sbjct: 121 cagaatgttttaccacagg 139
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 224,110
Number of extensions: 5184
Number of successful extensions: 5184
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5183
Number of HSP's successfully gapped: 4
Length of query: 2014
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1997
Effective length of database: 8,119,229
Effective search space: 16214100313
Effective search space used: 16214100313
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)