BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN11964 (UTR included)
(1519 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 105 2e-22
BF14_335_C2 96 2e-19
BF01055B2A04 90 1e-17
BF01031B2E06 80 1e-14
>BF01047B2H03
Length = 758
Score = 105 bits (53), Expect = 2e-22
Identities = 154/189 (81%), Gaps = 9/189 (4%)
Strand = Plus / Minus
Query: 87 ttacgtcactgtcaaaagacaaagatgccccagagctagagtcaaaacttcaattccata 146
|||| ||||| |||||| | | ||||||||| || ||| |||||| ||||||||||||||
Sbjct: 672 ttacatcactctcaaaaaatagagatgcccctgaactaaagtcaagacttcaattccata 613
Query: 147 aactgttaataacaggagcacaaagta---------gggttaggattaagtaagaaggca 197
||| ||| || | |||||||||||||| || ||||||| ||| ||||||||
Sbjct: 612 aacagtttatgataggagcacaaagtaacgagagtaggattaggatcaaggaagaaggcc 553
Query: 198 gaaaatacggatatattaaagtcttttattcgacaagacgagaatgctaaataaaatatc 257
|| ||||||||||||| |||||||||||||| ||||||||||||| | ||| || |||
Sbjct: 552 caagatacggatatattgaagtcttttattcggcaagacgagaatgatggatataacatc 493
Query: 258 catgcaatg 266
|||||||||
Sbjct: 492 catgcaatg 484
Score = 95.6 bits (48), Expect = 2e-19
Identities = 199/248 (80%), Gaps = 1/248 (0%)
Strand = Plus / Minus
Query: 440 aacttgctatatctgtgggaaggcagttgggactgctaagcacttgctggtggcatgtaa 499
||||||||||||||| | | |||||||||| | |||| |||| |||||| ||| |||||
Sbjct: 365 aacttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtag 306
Query: 500 ggtactcctggatagcggcgaacattcgcg-tcgtcacgatagtgttctggaaatcatac 558
| |||||||||||||||| || | | || || || ||||| ||| | | ||||||
Sbjct: 305 gctactcctggatagcggtcaatactaccggtctccatgatagggttttaaatttcatac 246
Query: 559 ctgaagcgtttaggctttcggtagccagagcgcgaaaagaaataaccacaaacgaaggat 618
||||||| |||| ||| ||||| || ||| |||||||||||||||||||| |||
Sbjct: 245 atgaagcggttagtattttggtagtcattgcggaaaaagaaataaccacaaacgggcgat 186
Query: 619 caataggttttgtgagagaaggccctagggctacaaaattaaacatcaagccttactcca 678
||| |||||||||||||||| | |||||||| ||| | |||||||||||||||||| |
Sbjct: 185 taattggttttgtgagagaagacattagggctataaagtcaaacatcaagccttactcta 126
Query: 679 tccttaaa 686
||||||||
Sbjct: 125 tccttaaa 118
>BF14_335_C2
Length = 1827
Score = 95.6 bits (48), Expect = 2e-19
Identities = 99/116 (85%)
Strand = Plus / Minus
Query: 779 atttctgttttcgcggattttaaagcgcgttgtgttaatagaccttagggtttcttggga 838
|||||||| |||||| ||||||||||||| | | ||||||| | || |||| ||||| |
Sbjct: 1273 atttctgtattcgcgaattttaaagcgcgctacgctaatagagcctacggttccttggaa 1214
Query: 839 aaccaacatccccaaagaacatgccatgaaggtcaataagtattacgagctcacta 894
||||||||||||||| | |||||||| |||||||| |||||||| ||||||||||
Sbjct: 1213 gaccaacatccccaaaaaccatgccatcaaggtcaacaagtattatgagctcacta 1158
>BF01055B2A04
Length = 830
Score = 89.7 bits (45), Expect = 1e-17
Identities = 101/119 (84%), Gaps = 3/119 (2%)
Strand = Plus / Minus
Query: 795 attttaaagcgcgttgtgttaatagaccttagggtttcttgggaaaccaacatccccaaa 854
||||| |||| |||||| |||||||| |||| | || | ||| |||||||||||||||||
Sbjct: 562 atttttaagctcgttgttttaatagagcttacgattccctggaaaaccaacatccccaaa 503
Query: 855 gaacatgccatgaaggtcaataagtattacgagctcactaacgaactcactaggaatag 913
|| | ||||| ||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 502 gaccgtgccaccgaggtcaataag---tacaagctcactaacgaactcactaggaatag 447
>BF01031B2E06
Length = 707
Score = 79.8 bits (40), Expect = 1e-14
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 837 gaaaccaacatccccaaagaacatgccatgaaggtcaataagtattacg-agctcactaa 895
|||||||||||||||||||| |||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacgaagctcactaa 495
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 178,755
Number of extensions: 3400
Number of successful extensions: 3400
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3399
Number of HSP's successfully gapped: 7
Length of query: 1519
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1502
Effective length of database: 8,119,229
Effective search space: 12195081958
Effective search space used: 12195081958
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)