BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12008 (UTR included)
(6961 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01062B1F09 1384 0.0
>BF01062B1F09
Length = 761
Score = 1384 bits (698), Expect = 0.0
Identities = 727/737 (98%)
Strand = Plus / Plus
Query: 1991 gagactgccagaattcacccaagattacctgaaaagctacggcttgaaaagagttattca 2050
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 gagactgccanaattcacccaagattacctgaaaagttacggcttgaaaagagttattca 60
Query: 2051 aaatggggatactgtgtttgaatttacaaaagagacagaaaaaaatatctctaaagatgt 2110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatggggatactgtgtttgaatttacaaaagagacagaaaaaaatatctctaaagatgt 120
Query: 2111 cctgaacgttaaaagctctccgttgaatgaatcagattcagagagtgaagaaaatttaaa 2170
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cctgaatgttaaaagctctccgttgaatgaatcagattcagagagtgaagaaaatttaaa 180
Query: 2171 aaatctggcggaaaatcttaaaaatgatctcaacaagcctaatagggataatggaaatcc 2230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaatctggcggaaaatcttaaaaatgatctcaacaagcctaatagggataatggaaatcc 240
Query: 2231 tgcttcgaatgaagttggtggaagtcaaagcaatcaatgtgttggatctattgataatac 2290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgcttcgaatgaagttggtggaagtcaaagcaatcaatgtgttggatctattgataatac 300
Query: 2291 tgaaagcaataatctagaagagagaagtaaaacacctgacgtaattattaataaaaatga 2350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgaaagcaataatctagaagagagaagtaaaacacctgacgtaattattaataaaaatga 360
Query: 2351 ttccacgtcagtagcacaggatgaaattaaatcctccttgctgaacgattcaactgatga 2410
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 ttccacgtcagtagcacaggatgaaattaaatcctccttgctgaatgattcaactgatga 420
Query: 2411 taatagtccaaacaaaaagagaaaacgacgtagcaatagtgtctccccatcatcgaaacg 2470
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 421 taatagtccaaacaaaaagagaaaacgacgtagcaatagtgtctccccgtcatcgaaacg 480
Query: 2471 aaaacacatgatggagagcatacacgctaagaaaatgttgctcacagactcgtccagctc 2530
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 aaaacacatgatggagagcatacacgctaagaaaatgttgctcacagactcatccagctc 540
Query: 2531 ggacacggaggacgaagcgttgacgggtgctctaaaacaaataagggattaccggttaac 2590
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 541 ggacacggaggacgaagcgttaacgggtgctctgaaacaaataagggattaccggttaac 600
Query: 2591 agggaactcgtcgggtgacaaggaaaagaaggataaaaacgaaaacgagccatccgattc 2650
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 601 agggaactcgtcgggtgacaaggaaaagaaggataagaacgaaaacgagccatccgattc 660
Query: 2651 tgactcgagttcgatatctttaaataaaagaaagagatcgagaagcaatagtggagaaaa 2710
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgactcaagttcgatatctttaaataaaagaaagagatcgagaagcaatagtggagaaaa 720
Query: 2711 tgtaaaagataaagata 2727
|||||||||||||||||
Sbjct: 721 tgtaaaagataaagata 737
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 153,339
Number of extensions: 29061
Number of successful extensions: 29061
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 29061
Number of HSP's successfully gapped: 1
Length of query: 6961
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 6943
Effective length of database: 8,109,745
Effective search space: 56305959535
Effective search space used: 56305959535
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)