BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12018 (UTR included)
(2542 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01019A1H08 115 4e-25
BF01049B1F01 103 1e-21
BF14_335_C2 98 8e-20
BF14_335_C4 96 3e-19
BF14_335_C5 90 2e-17
BF01014B2F02 86 3e-16
BF01056B2D01 74 1e-12
BF01016A2B02 72 5e-12
BF01044B1A07 70 2e-11
BF01016B1E06 70 2e-11
>BF01019A1H08
Length = 504
Score = 115 bits (58), Expect = 4e-25
Identities = 91/101 (90%), Gaps = 2/101 (1%)
Strand = Plus / Plus
Query: 1898 cattccatggactcaccgtgcgggcgccgggtccctcg--tcgcagggagaggagcttca 1955
||||| ||||| |||||||||||| ||||||||| ||| | ||||||||||||||||||
Sbjct: 381 cattcaatggattcaccgtgcgggtgccgggtccatcgcgttgcagggagaggagcttca 440
Query: 1956 acagtgcctgggacttgcgacctaggtgtaggtctaagggg 1996
||||||||||||| |||||||| |||||||||| |||||||
Sbjct: 441 acagtgcctgggagttgcgacccaggtgtaggtttaagggg 481
>BF01049B1F01
Length = 840
Score = 103 bits (52), Expect = 1e-21
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 1933 tcgtcgcagggagaggagcttcaacagtgcctgggacttgcgacctaggtgtaggtctaa 1992
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 586 tcgttgcagggagaggagcttcaacagtgcctgggacttgcgacccaggtgtaggtgtaa 645
Query: 1993 gggg 1996
||||
Sbjct: 646 gggg 649
>BF14_335_C2
Length = 1827
Score = 97.6 bits (49), Expect = 8e-20
Identities = 82/92 (89%), Gaps = 2/92 (2%)
Strand = Plus / Plus
Query: 1904 atggactcaccgtgcgggcgccgggtcc--ctcgtcgcagggagaggagcttcaacagtg 1961
||||| |||||||||||| ||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 831 atggattcaccgtgcgggtgccgggtccgccgcgttgcagggagaggagcttcaacagtg 890
Query: 1962 cctgggacttgcgacctaggtgtaggtctaag 1993
||||||| ||||||| |||||||||| ||||
Sbjct: 891 cctgggatttgcgacacaggtgtaggtttaag 922
>BF14_335_C4
Length = 1491
Score = 95.6 bits (48), Expect = 3e-19
Identities = 94/107 (87%), Gaps = 3/107 (2%)
Strand = Plus / Minus
Query: 1892 tctcatcattccatggactcaccgtgcgggcgccgggtccctcg--tcgcagggagagga 1949
||||| ||||||||||| ||||||||||| || ||| || ||| | ||||| ||||||
Sbjct: 1353 tctcagcattccatggattcaccgtgcggttgcggggaccatcgcgttgcagg-agagga 1295
Query: 1950 gcttcaacagtgcctgggacttgcgacctaggtgtaggtctaagggg 1996
|||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 1294 gcttcaacagtgcctgggacttgcgacccaggtgtaggtttaagggg 1248
>BF14_335_C5
Length = 1597
Score = 89.7 bits (45), Expect = 2e-17
Identities = 69/77 (89%)
Strand = Plus / Minus
Query: 1899 attccatggactcaccgtgcgggcgccgggtccctcgtcgcagggagaggagcttcaaca 1958
||||| |||| |||||||||||| ||||||| | || | ||| |||||||||||||||||
Sbjct: 1593 attccgtggattcaccgtgcgggtgccgggtgcatctttgcacggagaggagcttcaaca 1534
Query: 1959 gtgcctgggacttgcga 1975
|||||||||||||||||
Sbjct: 1533 gtgcctgggacttgcga 1517
>BF01014B2F02
Length = 623
Score = 85.7 bits (43), Expect = 3e-16
Identities = 67/75 (89%)
Strand = Plus / Plus
Query: 1911 caccgtgcgggcgccgggtccctcgtcgcagggagaggagcttcaacagtgcctgggact 1970
||||||||||| ||||||||| ||| |||||||||||||||||| ||| |||| |||||
Sbjct: 549 caccgtgcgggtgccgggtccagcgttgcagggagaggagcttcagcagcgcctaggact 608
Query: 1971 tgcgacctaggtgta 1985
||||||| |||||||
Sbjct: 609 tgcgacccaggtgta 623
>BF01056B2D01
Length = 728
Score = 73.8 bits (37), Expect = 1e-12
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 1892 tctcatcattccatggactcaccgtgcgggcgccgggtccctcg--tcgcagggagagga 1949
||||| ||||||||| | |||||||||||| ||||||||| || | ||||||||||||
Sbjct: 87 tctcaacattccatgaattcaccgtgcgggtgccgggtccatcacattgcagggagagga 146
Query: 1950 gcttcaacagtgcctgggac 1969
|||||||||| |||||||||
Sbjct: 147 gcttcaacagcgcctgggac 166
>BF01016A2B02
Length = 780
Score = 71.9 bits (36), Expect = 5e-12
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 1940 agggagaggagcttcaacagtgcctgggacttgcgacctaggtgtagg 1987
||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 230 agggagaggagcttcaacagtgcctgggaattgcgactcaggtgtagg 277
>BF01044B1A07
Length = 806
Score = 69.9 bits (35), Expect = 2e-11
Identities = 86/102 (84%), Gaps = 2/102 (1%)
Strand = Plus / Plus
Query: 1885 cgaaatttctcatcattccatggactcaccgtgcgggcgccgggtccctcg--tcgcagg 1942
||||| |||||| | ||| ||||| |||||||||||| | ||||||| ||| | |||||
Sbjct: 431 cgaaacttctcagcgttcaatggattcaccgtgcgggtggcgggtccatcgcgtggcagg 490
Query: 1943 gagaggagcttcaacagtgcctgggacttgcgacctaggtgt 1984
||||||||||||||| ||| |||||||| |||| | ||||||
Sbjct: 491 gagaggagcttcaactgtgtctgggactcgcgaaccaggtgt 532
>BF01016B1E06
Length = 606
Score = 69.9 bits (35), Expect = 2e-11
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 1938 gcagggagaggagcttcaacagtgcctgggacttgcgacctaggtgtaggtctaagggg 1996
|||| ||||||||||||||||||||| |||| | |||||| |||||||||| |||||||
Sbjct: 196 gcagagagaggagcttcaacagtgccggggagtagcgacccaggtgtaggtttaagggg 254
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 314,052
Number of extensions: 10756
Number of successful extensions: 10756
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 10752
Number of HSP's successfully gapped: 10
Length of query: 2542
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2525
Effective length of database: 8,119,229
Effective search space: 20501053225
Effective search space used: 20501053225
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)