BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12259 (UTR included)
(3808 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01019B1A02 1066 0.0
>BF01019B1A02
Length = 684
Score = 1066 bits (538), Expect = 0.0
Identities = 595/614 (96%)
Strand = Plus / Plus
Query: 3195 caggacggtatagacggttcattgaggaaaggcaatcgttggatgcacgactaccgcgtg 3254
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 53 caggacggtatagacggttcattgaggaaaggcaaccgttggatgcacgactaccgcgtg 112
Query: 3255 cccgctaccaaggtcgcgtacttcctcaggaaaccggacgacttaaggttttaaaggaac 3314
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 113 cccgctaccaaggtcgcgtacttcctcaggaaaccagacgacttaaggttttaaaggaac 172
Query: 3315 gaagtaacctacgcttgattctcaaatcaacattaatttgtaacgaattgcagatttttt 3374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 gaagtaacctacgcttgattctcaaatcaacattaatttgtaacgaattgcagatttttt 232
Query: 3375 atgccattttatttatagcgatgttgttgtctatgtcatatcgtttatctagctatttta 3434
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 233 atgccattttatttatagcgatgttgttgtctatgccatatcgtttatctagctatttta 292
Query: 3435 ttacgtaatatttaaatataacttaaaataattgatacgaaaaattttatcggtaatgaa 3494
||||| ||||||||||||| | |||||||||||||| ||||||| ||||||| |||||||
Sbjct: 293 ttacgcaatatttaaatattatttaaaataattgatgcgaaaaaatttatcgctaatgaa 352
Query: 3495 acttgtattatttatgagattaaaaaatcgtaattcaccaatgaagtgatactaattata 3554
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 353 acttgtattatttatgagattaaaagatcgtaattcaccaatgaagtgatactaattata 412
Query: 3555 gtttagtgtaatacaaatgaggccaaagctccgttttaaaccaattatctggtatgtaat 3614
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gtttagcgtaatacaaatgaggccaaagctccgttttaaaccaattatctggtatgtaat 472
Query: 3615 ataaaaagagtgctatatatttttataagtaaaataaaattttataaaaatgttctattg 3674
|||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 473 ataaaaagagtgctatatatttttataagtaaaataaaattttagaaaacttttctattg 532
Query: 3675 cgttggaagtatttttacttctcactttaataataatagtcctgtagaacttaaagtaca 3734
| |||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 533 cattggaagtatatttacttctcattttaataataatagtcctgtaggacttaaagtaca 592
Query: 3735 tagtattttattatcaaagattaaatctttattcacatatgtcataatgtcgcgtcttca 3794
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 593 tagtattttattatcaaagattaaatctttattcacatatgtcataatgtcacgtcttca 652
Query: 3795 tattttttgatctc 3808
||||||||||||||
Sbjct: 653 tattttttgatctc 666
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 384,228
Number of extensions: 6714
Number of successful extensions: 6714
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6714
Number of HSP's successfully gapped: 1
Length of query: 3808
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3790
Effective length of database: 8,109,745
Effective search space: 30735933550
Effective search space used: 30735933550
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)