BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12275 (UTR included)
(2311 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01051B2A11 726 0.0
>BF01051B2A11
Length = 738
Score = 726 bits (366), Expect = 0.0
Identities = 375/378 (99%)
Strand = Plus / Plus
Query: 478 tgtattatattaattaatatataatgtgtgaagaacagaaacctctgttcagagatctcg 537
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 1 tgtattatattaattaatatataatgtgtgaagaacagaaacctttgttcagagacctcg 60
Query: 538 caggtgatgatccggaacccgaggtgacggagatcgagtcgctctgtctgaattgccacg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caggtgatgatccggaacccgaggtgacggagatcgagtcgctctgtctgaattgccacg 120
Query: 598 aaaatggcatgactcgtcttctgttaactcgaatcccgcactacaagaatgtcgttataa 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatggcatgactcgtcttctgttaactcgaatcccgcactacaagaatgtcgttataa 180
Query: 658 tgtccttcaactgtgagcactgcggctttgagaacaacgagatacaaccagggggagcgt 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgtccttcaactgtgagcactgcggctttgagaacaacgagatacaaccagggggagcgt 240
Query: 718 acgccgagttaggagtacgttggaagctgaacattcaagagtctcgtgacctgaatcgtc 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acgccgagttaggagtacgttggaagctgaacattcaagagtctcgtgacctgaatcgtc 300
Query: 778 aggtggtgaagagtgaccatacagccgtcatcataccggagctggactttgaaataccgg 837
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 301 aggtggtgaagagtgaccatacagccgtcatcataccggagttggactttgaaataccgg 360
Query: 838 ccctgagtcagaagggag 855
||||||||||||||||||
Sbjct: 361 ccctgagtcagaagggag 378
Score = 581 bits (293), Expect = e-165
Identities = 302/306 (98%)
Strand = Plus / Plus
Query: 889 accaggccgttagaagacaacagcatccagaacatgcggagcaaatagatcagttcgtcg 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 accaggccgttagaagacaacagcatccagaacatgcggagcaaatagatcagttcgtcg 492
Query: 949 ccaagctggaggaacttagaagtctgcaaaagacctggaccctcatcatagaagatataa 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccaagctggaggaacttagaagtctgcaaaagacctggaccctcatcatagaagatataa 552
Query: 1009 ccgggaactgtttcgtagagaacccagaggctcctaaaaaggatccgggctgtgtcagga 1068
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 553 ccgggaactgtttcgtagagaaccccgaggctcctaaaaaggatccgggctgtgtcagga 612
Query: 1069 cggacttcaagaggagtaaagaggatgatatcaaactgggaatatacacggagggctcgc 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 cggacttcaagaggagtaaagaggatgatatcaaactgggaatatacacggagggctcgc 672
Query: 1129 aagccctcgccggagccctaacgtcggaggagccctcggtggctagctacgaccagctcg 1188
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 673 aagccctcgccggagccctaacgtcggnnnagccctcggtggctagctacgaccagctcg 732
Query: 1189 catcgg 1194
||||||
Sbjct: 733 catcgg 738
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 348,788
Number of extensions: 10586
Number of successful extensions: 10586
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 10586
Number of HSP's successfully gapped: 2
Length of query: 2311
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2294
Effective length of database: 8,119,229
Effective search space: 18625511326
Effective search space used: 18625511326
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)