BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12366 (UTR included)
(3835 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01042A2B08 850 0.0
BF01053A2C06 609 e-173
BF01060B1D11 127 1e-28
BF01047B2H03 115 5e-25
>BF01042A2B08
Length = 719
Score = 850 bits (429), Expect = 0.0
Identities = 444/449 (98%)
Strand = Plus / Plus
Query: 2447 gagggacacgcgggccgccagtgaagccctacgggcagaggccagggacgcggaccagga 2506
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 271 gagggacacgcgggccgccagtgaagcactacgggcagaggcccgggacgcggaccagga 330
Query: 2507 ggctaagatgatagacgctgacgtcgacagaatcagtgcggagctggagcgcgtgacgtc 2566
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 331 ggctaagatgatagacgctgacgtcgacagaatcagtgcggagttggagcgcgttacgtc 390
Query: 2567 agacctggagtcgcaggtgatgtctcgtgagcagcgcgccagactgctggacgacttgga 2626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agacctggagtcgcaggtgatgtctcgtgagcagcgcgccagactgctggacgacttgga 450
Query: 2627 ctacgccgtcagggtgcacgactccaagaggacgctggccgacgagatacagaagatggt 2686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ctacgccgtcagggtgcacgactccaagaggacgctggccgacgagatacagaagatggt 510
Query: 2687 gtcaagcaaagagacggagctggctctgtggcagaagaagaccctggagagctgcgggga 2746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtcaagcaaagagacggagctggctctgtggcagaagaagaccctggagagctgcgggga 570
Query: 2747 gtaccgccagaggctcatacacctggcggggctgccggcgctcaacgcactcgccatcga 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtaccgccagaggctcatacacctggcggggctgccggcgctcaacgcactcgccatcga 630
Query: 2807 cgagaattcgttgatgggtgccgagtgtgtgtcgctggtgaccctggccgtggacacgct 2866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 cgagaattcgttgatgggtgccgagtgtgtgtcgctggtgaccctggccgtggacacgct 690
Query: 2867 ccgtgaggaggccagccgtctgtccgcta 2895
||||||||||||||| |||||||||||||
Sbjct: 691 ccgtgaggaggccagtcgtctgtccgcta 719
Score = 424 bits (214), Expect = e-118
Identities = 220/222 (99%)
Strand = Plus / Plus
Query: 2225 ctgtctgcggagagactacttgtataagtgctggataagattccaacacccaggacacca 2284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctgtctgcggagagactacttgtataagtgctggataagattccaacacccaggacacca 60
Query: 2285 gttcgaggatctgaatgaagagtatctggtgaacttgaagtcgttgctggggaacgacga 2344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttcgaggatctgaatgaagagtatctggtgaacttgaagtcgttgctggggaacgacga 120
Query: 2345 ggagaagatcaaggagttggagcaagttatactgaaatactctgcgtgtctgaatgacga 2404
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 121 ggagaagatcaaggagttggagcaagttatactgaaatactctgcgtgcctgaatgacga 180
Query: 2405 ggcggaggcggccgctcgggctgaagtggcgcggcgcgagga 2446
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 181 ggcggaggcggctgctcgggctgaagtggcgcggcgcgagga 222
Score = 135 bits (68), Expect = 6e-31
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1586 ctgtctgcggagagactacttgtataagtgctggataagattccaacatccaggacacca 1645
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 ctgtctgcggagagactacttgtataagtgctggataagattccaacacccaggacacca 60
Query: 1646 gttcgaggatct 1657
||||||||||||
Sbjct: 61 gttcgaggatct 72
>BF01053A2C06
Length = 780
Score = 609 bits (307), Expect = e-173
Identities = 332/339 (97%), Gaps = 1/339 (0%)
Strand = Plus / Plus
Query: 518 ttgggtgaaatatgaaactaaagctttccctttggtattaagacttcactatgatcagct 577
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgggtgaaatatgatactaaagcgttccctttggtattaagacttcactatgatcagct 60
Query: 578 tcttattacaatggaggaaaaagttatagaatcacttaatataaatagcaaactaaaagg 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcttattacaatggaggaaaaagttatagaatcacttaatataaatagcaaactaaaagg 120
Query: 638 gattttcaaagatgacgtacttatattaattattagcgttattggacaggaggtcagaaa 697
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gattttcaaagatgacgtacttatattaattattagcgttattggacaggaggtcagaaa 180
Query: 698 aattaaatttcaaattaaagaaaatgttaaccagtgcttacaaaaattaggtttaagatt 757
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattaaatttcaaataaaagaaaatgttaaccagtgcttacaaaaattaggtttaagatt 240
Query: 758 ccctgtgttaaaatttggttcagagccttctagaaaaaaatttaaaggaaaatatcgtaa 817
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||
Sbjct: 241 ccctgtgttaaaatttggttcagaaccatctag-aaaaaatttaaaggaaaatatcgcaa 299
Query: 818 tgtagaggacatattaaagaaaacatttgaagtaaaaga 856
|||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tgtagaggacatattaaagaaaacatttgaagtaaaaga 338
>BF01060B1D11
Length = 799
Score = 127 bits (64), Expect = 1e-28
Identities = 148/176 (84%)
Strand = Plus / Minus
Query: 3583 tgttgaagttgtggctcgggctcgcgctgtcgaatgattcgtcagcgttattcagggagc 3642
||||||| ||||||||| |||||||| |||| |||| |||| || ||| | ||||| |
Sbjct: 660 tgttgaatttgtggctccggctcgcgacatcgactgatacgtcggctttaattagggatc 601
Query: 3643 gcaataattttgggatgaatctgaaaaggccatcaaagctccatatacacctatgagttt 3702
|||||| ||||||||||| ||| ||||||||||| ||||| ||| |||| || ||||||
Sbjct: 600 gcaatagttttgggatgagtctaaaaaggccatcggagctctataaacacttaagagttt 541
Query: 3703 ccaagagacatattctggggaaatcccaggatgacgtcgttacatcactcccaaaa 3758
||||||||||||| | ||||||| |||| |||| ||| |||||||||||||||||
Sbjct: 540 ccaagagacatatcccggggaaagcccataatgatgtcattacatcactcccaaaa 485
>BF01047B2H03
Length = 758
Score = 115 bits (58), Expect = 5e-25
Identities = 136/162 (83%)
Strand = Plus / Minus
Query: 3656 gatgaatctgaaaaggccatcaaagctccatatacacctatgagtttccaagagacatat 3715
||||| ||| ||||||||||| ||||| ||| |||| || |||||||||||||||||||
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagacatat 699
Query: 3716 tctggggaaatcccaggatgacgtcgttacatcactcccaaaagacaatgatgccctaga 3775
| ||||||| |||| |||| ||| ||||||||||| ||||| | | ||||||| ||
Sbjct: 698 cccggggaaagcccataatgatgtcattacatcactctcaaaaaatagagatgcccctga 639
Query: 3776 gctagaatcaagacttcgattccataaacagtttatgatagg 3817
||| | |||||||||| ||||||||||||||||||||||||
Sbjct: 638 actaaagtcaagacttcaattccataaacagtttatgatagg 597
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 386,926
Number of extensions: 8941
Number of successful extensions: 8941
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 8939
Number of HSP's successfully gapped: 6
Length of query: 3835
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3817
Effective length of database: 8,109,745
Effective search space: 30954896665
Effective search space used: 30954896665
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)