BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12387 (UTR included)
(1243 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 163 8e-40
BF01060B1D11 143 8e-34
>BF01047B2H03
Length = 758
Score = 163 bits (82), Expect = 8e-40
Identities = 161/186 (86%), Gaps = 1/186 (0%)
Strand = Plus / Minus
Query: 726 gccccagagctacagtgaagacttcaattccataaacagtttatgataggagcaccaagt 785
||||| || ||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 646 gcccctgaactaaagtcaagacttcaattccataaacagtttatgataggagcacaaagt 587
Query: 786 aac-agagtagggctagcatcaagtgagaaggccaaaggaacggagatattgaagtcttt 844
||| |||||||| ||| |||||| |||||||| ||| ||||| ||||||||||||||
Sbjct: 586 aacgagagtaggattaggatcaaggaagaaggcccaagatacggatatattgaagtcttt 527
Query: 845 tattcagcaagacgagaatgcttgatgtgagatccgtgcgatgagtttagagatgcataa 904
||||| |||||||||||||| | ||| | | |||| ||| ||||||||||| ||||| ||
Sbjct: 526 tattcggcaagacgagaatgatggatataacatccatgcaatgagtttagatatgcagaa 467
Query: 905 cgagtg 910
||||||
Sbjct: 466 cgagtg 461
Score = 73.8 bits (37), Expect = 6e-13
Identities = 61/69 (88%)
Strand = Plus / Minus
Query: 500 gatgaatctaaaaggaccatcggagctctataaacaccttagagtttccaagagacttgt 559
||||| ||||||| | ||||||||||||||||||||| | |||||||||||||||| | |
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagacatat 699
Query: 560 cctggggaa 568
|| ||||||
Sbjct: 698 cccggggaa 690
>BF01060B1D11
Length = 799
Score = 143 bits (72), Expect = 8e-34
Identities = 145/168 (86%), Gaps = 1/168 (0%)
Strand = Plus / Minus
Query: 744 agacttcaattccataaacagtttatgataggagcaccaagtaac-agagtagggctagc 802
|||||||||||||| |||||||||||||||||||||| ||||||| |||||||| |||
Sbjct: 456 agacttcaattccacaaacagtttatgataggagcacaaagtaacgagagtaggattagg 397
Query: 803 atcaagtgagaaggccaaaggaacggagatattgaagtcttttattcagcaagacgagaa 862
|||||| ||||||| ||| | ||| |||||||||| |||||||||||||||||||||
Sbjct: 396 atcaaggaagaaggctcaagatatggatatattgaagtattttattcagcaagacgagaa 337
Query: 863 tgcttgatgtgagatccgtgcgatgagtttagagatgcataacgagtg 910
|| | ||| | |||||| ||| ||| ||||||||||||| ||||||||
Sbjct: 336 tgatggatataagatccatgcaatgcgtttagagatgcagaacgagtg 289
Score = 107 bits (54), Expect = 4e-23
Identities = 87/98 (88%)
Strand = Plus / Minus
Query: 471 gctttattgagggatcgcaattgttttgggatgaatctaaaaggaccatcggagctctat 530
|||||| | |||||||||||| |||||||||||| ||||||| | |||||||||||||||
Sbjct: 616 gctttaattagggatcgcaatagttttgggatgagtctaaaaaggccatcggagctctat 557
Query: 531 aaacaccttagagtttccaagagacttgtcctggggaa 568
|||||| | |||||||||||||||| | ||| ||||||
Sbjct: 556 aaacacttaagagtttccaagagacatatcccggggaa 519
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 189,629
Number of extensions: 5033
Number of successful extensions: 5033
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 5031
Number of HSP's successfully gapped: 4
Length of query: 1243
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1226
Effective length of database: 8,119,229
Effective search space: 9954174754
Effective search space used: 9954174754
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)