BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12446 (UTR included)
(2476 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01023A2A12 111 5e-24
BF01040A1G09 98 8e-20
BF01056B1D02 92 5e-18
BF01031B1E12 84 1e-15
BF01010B2F09 84 1e-15
BF01052B1H02 82 5e-15
>BF01023A2A12
Length = 723
Score = 111 bits (56), Expect = 5e-24
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 2319 ataatttcaaattataagtttgaaatcgccaatccgcattgagcaagcgtggcgattaat 2378
||||||||||||||||||||||||||| |||||| || |||||| ||||||| |||||||
Sbjct: 216 ataatttcaaattataagtttgaaatcaccaatcagccttgagcgagcgtggtgattaat 275
Query: 2379 gctctaacctgctccatgtg 2398
|||||||||| |||||||||
Sbjct: 276 gctctaaccttctccatgtg 295
>BF01040A1G09
Length = 753
Score = 97.6 bits (49), Expect = 8e-20
Identities = 76/85 (89%)
Strand = Plus / Plus
Query: 2321 aatttcaaattataagtttgaaatcgccaatccgcattgagcaagcgtggcgattaatgc 2380
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 10 aatttcaaattataagtttgaaatcgccaacccatcttgagcaagcgtggcgattaatgc 69
Query: 2381 tctaacctgctccatgtgggaagag 2405
| ||||| ||||||| | ||||||
Sbjct: 70 ttaaaccttctccatgcgagaagag 94
>BF01056B1D02
Length = 778
Score = 91.7 bits (46), Expect = 5e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 2319 ataatttcaaattataagtttgaaatcgccaatccgcattgagcaagcgtggcgattaat 2378
|||||||||||||||||| ||||||||||||| ||| |||||||||||||| | |||||
Sbjct: 617 ataatttcaaattataagattgaaatcgccaacccgtcttgagcaagcgtggtggttaat 676
Query: 2379 gctctaacct 2388
||||||||||
Sbjct: 677 gctctaacct 686
>BF01031B1E12
Length = 730
Score = 83.8 bits (42), Expect = 1e-15
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 2326 caaattataagtttgaaatcgccaatccgcattgagcaagcgtggcgattaatgctctaa 2385
|||| |||||| ||||||||||||| ||| |||||||||||||| ||||||||||||||
Sbjct: 97 caaagtataagattgaaatcgccaacccgtcttgagcaagcgtggtgattaatgctctaa 156
Query: 2386 cctgctccatgtgggaag 2403
||| |||| |||| ||||
Sbjct: 157 ccttctccgtgtgagaag 174
>BF01010B2F09
Length = 764
Score = 83.8 bits (42), Expect = 1e-15
Identities = 69/78 (88%)
Strand = Plus / Minus
Query: 2327 aaattataagtttgaaatcgccaatccgcattgagcaagcgtggcgattaatgctctaac 2386
||||||||| || |||||||||||||| |||||| ||||||| |||||||||||||||
Sbjct: 380 aaattataaaattaaaatcgccaatccgtcttgagcgagcgtggtgattaatgctctaac 321
Query: 2387 ctgctccatgtgggaaga 2404
|| ||||||||| |||||
Sbjct: 320 cttctccatgtgagaaga 303
>BF01052B1H02
Length = 790
Score = 81.8 bits (41), Expect = 5e-15
Identities = 89/104 (85%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 2295 aaaacatcgtgaggaaacctaata--ataatttcaaattataagtttgaaatcgccaatc 2352
|||||||||||||||||||| | ||||||| |||| || |||||||||||||||| |
Sbjct: 421 aaaacatcgtgaggaaacctggtcttataatttgaaataattagtttgaaatcgccaacc 362
Query: 2353 cgcattgagcaagcgtggcgattaatgctctaacctgctccatg 2396
|| |||||||||||||| | ||||||||||||| | |||||||
Sbjct: 361 cgtcttgagcaagcgtggtgcttaatgctctaactttctccatg 318
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 331,793
Number of extensions: 11914
Number of successful extensions: 11914
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 11914
Number of HSP's successfully gapped: 6
Length of query: 2476
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2459
Effective length of database: 8,119,229
Effective search space: 19965184111
Effective search space used: 19965184111
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)