BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12589 (UTR included)
(4165 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01030A2A02 938 0.0
>BF01030A2A02
Length = 735
Score = 938 bits (473), Expect = 0.0
Identities = 485/489 (99%)
Strand = Plus / Plus
Query: 3424 cagtggcgctggcggctgagcgtcttcagcgtcgcgggtctgtggggtctctggacagtg 3483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cagtggcgctggcggctgagcgtcttcagcgtcgcgggtctgtggggtctctggacagtg 306
Query: 3484 gtatgtcggtttctttccaacacgggagtagaacagcactcgccacatccccccgacatc 3543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gtatgtcggtttctttccaacacgggagtagaacagcactcgccacatccccccgacatc 366
Query: 3544 cgccggaccaacgatcgccgggtcgcctcttcggcggtatattccccggtcgtcaacgca 3603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cgccggaccaacgatcgccgggtcgcctcttcggcggtatattccccggtcgtcaacgca 426
Query: 3604 aactgagcgcttccggtgtgccagacacgaagggccaaatcgccaaaagcactgaggtgt 3663
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 427 aactgagcgcttccggtgtgccagacacgaagggtcaaatcgccaaaagcactgaggtgt 486
Query: 3664 aaacattgacggaatcgattcttatatcgatattattatccgagtcgttcggttttgaaa 3723
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 aaacattgacggaatcgattcttatatcgatattattattcgagtcgttcggttttgaaa 546
Query: 3724 taactgttcggccacaccgcttcttcctgcagtcggttagggattcgattatctgatttt 3783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 taactgttcggccacaccgcttcttcctgcagtcggttagggattcgattatctgatttt 606
Query: 3784 ttttatgtgctcagatacatctttttatatttgccagttttaaatttttctaagtgccat 3843
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ttttatgtgctcagatacgtctttttatatttgccagttttaaatttttctaagtgccat 666
Query: 3844 cttacttaattcccaaaccctgaatcgagatttattgtctagttgagatttgatttatag 3903
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 667 cttacttaattcccaaaccctgaatcgagatttattgtctagttgagagttgatttatag 726
Query: 3904 ttttcacat 3912
|||||||||
Sbjct: 727 ttttcacat 735
Score = 285 bits (144), Expect = 3e-76
Identities = 165/171 (96%), Gaps = 2/171 (1%)
Strand = Plus / Plus
Query: 3191 caggggcaaggggagggggacggggaacaccggcaggaatgtgatggagaatcgtgacag 3250
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caggggcaatgggagggggacggggaacaccggcaggaatgtgatggagaatcgtgacag 60
Query: 3251 cggcgtggctgatgtggaaatagatcaccaacagtgtatggagcacgttcacgtccacgg 3310
|||||||||||||||||||||||| |||||||| ||||||| ||||||||||| |||||
Sbjct: 61 cggcgtggctgatgtggaaatagaccaccaaca--gtatggaacacgttcacgtgcacgg 118
Query: 3311 cgtggtggtacccccgcccccgtcgtgtccagcgcccgccgccccctcccg 3361
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 cgtggtggtacccccgcccccgtcgtgtccagcgcccgccgccccctcccg 169
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 407,018
Number of extensions: 7754
Number of successful extensions: 7754
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7753
Number of HSP's successfully gapped: 2
Length of query: 4165
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4147
Effective length of database: 8,109,745
Effective search space: 33631112515
Effective search space used: 33631112515
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)