BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12646 (UTR included)
(2233 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3046_C1 117 8e-26
BF01024A2B03 105 3e-22
BF01044A1D01 74 1e-12
BF01049B2B11 68 7e-11
>BF14_3046_C1
Length = 1016
Score = 117 bits (59), Expect = 8e-26
Identities = 84/91 (92%), Gaps = 1/91 (1%)
Strand = Plus / Minus
Query: 111 atgctatggctttattcgcactggaatcgtaaaatatttttccaatgtcaacgtttttat 170
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 1016 atgctatggcttc-ttcgcactggaatcgtggaatattttgccaatgtcaacgtttttat 958
Query: 171 tagttggacgaattataaactcgagtactgt 201
| |||||| ||||||||||||||||||||||
Sbjct: 957 ttgttggaggaattataaactcgagtactgt 927
>BF01024A2B03
Length = 724
Score = 105 bits (53), Expect = 3e-22
Identities = 112/131 (85%), Gaps = 3/131 (2%)
Strand = Plus / Minus
Query: 108 ttaatgctatggctttattcgcactggaatcgtaaaatatttttccaatgtcaacgtttt 167
|||||||||| |||| || |||||||||||| |||||||| ||||||||||||||||
Sbjct: 329 ttaatgctatcgcttcgctctcactggaatcgttgaatattttgccaatgtcaacgtttt 270
Query: 168 tattagttggacgaattataaactcgagtactgtaaggaggaaacacg---gagtttgtc 224
|||| || ||||||||||||| | |||||||||| |||||||||||| |||||||||
Sbjct: 269 tatttgtaggacgaattataatcccgagtactgtttggaggaaacacgaacgagtttgtc 210
Query: 225 aaatggaataa 235
||| ||||||
Sbjct: 209 gaattgaataa 199
>BF01044A1D01
Length = 742
Score = 73.8 bits (37), Expect = 1e-12
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 111 atgctatggctttattcgcactggaatcgtaaaatatttttccaatgtcaacgtttttat 170
|||||||||||| ||| ||||||||||||| |||||| | |||||||||||||||||||
Sbjct: 186 atgctatggcttcatttgcactggaatcgtggaatattctgccaatgtcaacgtttttat 245
Query: 171 t 171
|
Sbjct: 246 t 246
>BF01049B2B11
Length = 780
Score = 67.9 bits (34), Expect = 7e-11
Identities = 61/70 (87%)
Strand = Plus / Minus
Query: 119 gctttattcgcactggaatcgtaaaatatttttccaatgtcaacgtttttattagttgga 178
|||| |||||| |||||||||| |||||||| | |||||| ||||||||||| ||||||
Sbjct: 84 gcttcattcgctctggaatcgtggaatattttgctaatgtcgacgtttttatttgttgga 25
Query: 179 cgaattataa 188
|||||||||
Sbjct: 24 tgaattataa 15
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 335,771
Number of extensions: 12839
Number of successful extensions: 12839
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 12838
Number of HSP's successfully gapped: 4
Length of query: 2233
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2216
Effective length of database: 8,119,229
Effective search space: 17992211464
Effective search space used: 17992211464
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)