BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12729 (UTR included)
(2029 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01060A2C04 103 1e-21
>BF01060A2C04
Length = 844
Score = 103 bits (52), Expect = 1e-21
Identities = 102/117 (87%), Gaps = 5/117 (4%)
Strand = Plus / Minus
Query: 1808 aacagatgccaaaaatgttgccatctcatcgtagtacagccacactggcttataaacatc 1867
||||| ||||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct: 702 aacaggtgccaaaaatgtttctatggcatcgtagtacagccacactggcttataaacatc 643
Query: 1868 atcttctgcaccggtaccagattttaatgattgtgttttgcgccgcagatgctgacg 1924
||||||| || | ||| |||||||||||| | ||| ||||||||||||||||||
Sbjct: 642 atcttct---cctgcaccggattttaatgat--tttttggcgccgcagatgctgacg 591
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 259,724
Number of extensions: 6446
Number of successful extensions: 6446
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6444
Number of HSP's successfully gapped: 1
Length of query: 2029
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2012
Effective length of database: 8,119,229
Effective search space: 16335888748
Effective search space used: 16335888748
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)