BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12792 (UTR included)
(1666 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01045A1C03 799 0.0
BF01062A1H02 105 2e-22
BF14_2249_C1 74 8e-13
>BF01045A1C03
Length = 505
Score = 799 bits (403), Expect = 0.0
Identities = 403/403 (100%)
Strand = Plus / Minus
Query: 1264 tgatatcaattgttttattaacatttaactaaactattgtctaaacatgttaacgcctat 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgatatcaattgttttattaacatttaactaaactattgtctaaacatgttaacgcctat 424
Query: 1324 gtatccgcctctttctgttccttattaagaagcctcttccacactttgacctttcctctc 1383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtatccgcctctttctgttccttattaagaagcctcttccacactttgacctttcctctc 364
Query: 1384 agctccctgagccgtttcatttcctccttgaagtcctggtgttcatctctaaacaatccg 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 agctccctgagccgtttcatttcctccttgaagtcctggtgttcatctctaaacaatccg 304
Query: 1444 tattctctcagtttcaacatcaacgcgtgtgtctccacgtgccggggatagtaatgtaag 1503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tattctctcagtttcaacatcaacgcgtgtgtctccacgtgccggggatagtaatgtaag 244
Query: 1504 atgttctcgttggtgtgaagcggtcgttcggaaaatatttttacgactttcattgacttt 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 atgttctcgttggtgtgaagcggtcgttcggaaaatatttttacgactttcattgacttt 184
Query: 1564 gcgttggttggtatcgctacttcaccgaaaattctattagacaaacgcttcatcctctcg 1623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gcgttggttggtatcgctacttcaccgaaaattctattagacaaacgcttcatcctctcg 124
Query: 1624 gcgtatttggtttgattgtttattaattgtgaatatttcacga 1666
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcgtatttggtttgattgtttattaattgtgaatatttcacga 81
>BF01062A1H02
Length = 876
Score = 105 bits (53), Expect = 2e-22
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 81 ttagaggaggaaattgtgatgaaaattggtatttttttttcaaacatattctgcttgccc 140
||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 174 ttagaggaggaaattattatgaaaattggtatttttttt-caaacatattctgcttaccc 116
Query: 141 taccccaaatctctgtgcacg 161
|| ||| ||||||||||||||
Sbjct: 115 taacccgaatctctgtgcacg 95
>BF14_2249_C1
Length = 1315
Score = 73.8 bits (37), Expect = 8e-13
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 97 tgatgaaaattggtatttttttttcaaacatattctgcttgccctaccccaaatctctgt 156
|||| |||||| |||| |||||| |||||||||| |||| |||||||||||||||||||
Sbjct: 297 tgataaaaattagtatattttttccaaacatattttgctcaccctaccccaaatctctgt 238
Query: 157 gcacg 161
|||||
Sbjct: 237 gcacg 233
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 206,688
Number of extensions: 4590
Number of successful extensions: 4590
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4589
Number of HSP's successfully gapped: 3
Length of query: 1666
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1649
Effective length of database: 8,119,229
Effective search space: 13388608621
Effective search space used: 13388608621
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)