BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12799 (UTR included)
(3286 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031A2F07 910 0.0
BF01037B1H08 84 2e-15
BF01010B2F09 68 1e-10
>BF01031A2F07
Length = 541
Score = 910 bits (459), Expect = 0.0
Identities = 465/467 (99%)
Strand = Plus / Plus
Query: 2447 aggctgcgagaaggtggtgttggtggggaggagcctccccagcggaggggaggagccatc 2506
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 52 aggctgcgagaaggtggtgttggtggggaggagcctctccagcggaggggaggagccatc 111
Query: 2507 cgggaccgagctggagcaggtgttccccgtcaacgacgaagacgacttccccgagctaca 2566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 cgggaccgagctggagcaggtgttccccgtcaacgacgaagacgacttccccgagctaca 171
Query: 2567 gaagtatctggtgctgaacgagcccgggttctacgtacccgtcgtcaacccgtacggttg 2626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 172 gaagtatctggtgctgaacgagcccgggttctacgtacccgtcgtcaacccgtacgggtg 231
Query: 2627 gcaggtcagatattatcgcgtccgtgtcccgggatgccgcgtgctggccgtcagctgtcg 2686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 gcaggtcagatattatcgcgtccgtgtcccgggatgccgcgtgctggccgtcagctgtcg 291
Query: 2687 gaccggcctgcccctggggccggtgctgctgggacacctgggactctgtagcatcagaga 2746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaccggcctgcccctggggccggtgctgctgggacacctgggactctgtagcatcagaga 351
Query: 2747 tacacacgccgacgatgcacaaaccaacgtcgccagctagcgcgctcgggcgccggactc 2806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tacacacgccgacgatgcacaaaccaacgtcgccagctagcgcgctcgggcgccggactc 411
Query: 2807 gcgcgtactggttgtattcatacatgttatattacctcggatgtagcgctttgtatacaa 2866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gcgcgtactggttgtattcatacatgttatattacctcggatgtagcgctttgtatacaa 471
Query: 2867 ataaagttttattgaaaaaaaatatcatggcgagaatataaaaagta 2913
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ataaagttttattgaaaaaaaatatcatggcgagaatataaaaagta 518
>BF01037B1H08
Length = 758
Score = 83.8 bits (42), Expect = 2e-15
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 3146 ggttaaaggcccgcctctcacacgcgagggcgcgggttcgaaacctggcaagta 3199
|||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 87 ggttaaaggcccgcctctcatacgtgaaggcgcgggttcgaaacctggcaagta 140
>BF01010B2F09
Length = 764
Score = 67.9 bits (34), Expect = 1e-10
Identities = 49/54 (90%)
Strand = Plus / Minus
Query: 3146 ggttaaaggcccgcctctcacacgcgagggcgcgggttcgaaacctggcaagta 3199
||||||||||| |||||||||||| || | ||||||||||||||||| ||||||
Sbjct: 534 ggttaaaggccagcctctcacacgtgaagtcgcgggttcgaaacctgacaagta 481
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 291,208
Number of extensions: 5147
Number of successful extensions: 5147
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5147
Number of HSP's successfully gapped: 3
Length of query: 3286
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3268
Effective length of database: 8,109,745
Effective search space: 26502646660
Effective search space used: 26502646660
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)