BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12810 (UTR included)
(6433 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01029A1E04 1308 0.0
>BF01029A1E04
Length = 678
Score = 1308 bits (660), Expect = 0.0
Identities = 673/678 (99%)
Strand = Plus / Plus
Query: 5616 caattccgtaaaatggaaactggagaggcgctcactcctaacgcgatgaaagccaccatt 5675
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caattccctaaaatggaaactggagaggcgctcactcctaacgcgatgaaagccaccatt 60
Query: 5676 cgtaccctgggtacagaattccaggatattcttcaaacttacaaagtgcacaacatcacc 5735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgtaccctgggtacagaattccaggatattcttcaaacttacaaagtgcacaacatcacc 120
Query: 5736 tggtgtggggccaagcgcgctgctccagcacccgcccaaactgcactcctcgcggtcgca 5795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggtgtggggccaagcgcgctgctccagcacccgcccaaactgcactcctcgcggtcgca 180
Query: 5796 gcgatgttaccaatcgctgctttcgtggccacacttgtgttgtgttgtatgcattctcat 5855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gcgatgttaccaatcgctgctttcgtggccacacttgtgttgtgttgtatgcattctcat 240
Query: 5856 gccaaacgtcgaatgcgtgcagcgctgaccagagaaacaccgcctcgtatgtattccgag 5915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gccaaacgtcgaatgcgtgcagcgctgaccagagaaacaccgcctcgtatgtattccgag 300
Query: 5916 cctctctactccacgtgacggaaacaagcggatgactatataataaaaaaatagtcgtgc 5975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cctctctactccacgtgacggaaacaagcggatgactatataataaaaaaatagtcgtgc 360
Query: 5976 aatgcacacactgccattacaagtgataaacatgtttagatacaaattgttagacattta 6035
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aatgcacacactgccattacaagtgataaacatgtttagatacaaattgttagacattta 420
Query: 6036 tagatcaaattaaaaatgttaccctacaaaacagagaaggtacgtcacatagcagcctga 6095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tagatcaaattaaaaatgttaccctacaaaacagagaaggtacgtcacatagcagcctga 480
Query: 6096 tattgttcctattcaaagattttcatcttaaaatcacattagtttttgttactttatatc 6155
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tattgttcctattcaaagatcttcatcttaaaatcacattagtttttgttactttatatc 540
Query: 6156 ttagaatctgtgtatccgacaatgttattatgtgcctcctgttgccaatgagccgatcta 6215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttagaatctgtgtatccgacaatgttattatgtgcctcctgttgccaatgagccgatcta 600
Query: 6216 accatatataaaataaacattctcaaaaaagctgttcctaaaatttaattttgataattt 6275
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 601 accatatatnnaataaacattctcaaaaaagccgttcctaaaatttaattttgataattt 660
Query: 6276 gttttgttttattatatg 6293
||||||||||||||||||
Sbjct: 661 gttttgttttattatatg 678
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 96,436
Number of extensions: 10870
Number of successful extensions: 10870
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 10870
Number of HSP's successfully gapped: 1
Length of query: 6433
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 6415
Effective length of database: 8,109,745
Effective search space: 52024014175
Effective search space used: 52024014175
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)