BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12888 (UTR included)
(1363 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01046A1H01 924 0.0
>BF01046A1H01
Length = 801
Score = 924 bits (466), Expect = 0.0
Identities = 487/495 (98%)
Strand = Plus / Plus
Query: 1 gtgtaaaaatacgagcaaaggattgggttgataggtggtataatgaaattaatgattatt 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 307 gtgtaaaaatacgagcaaaggattgggttgatagatggtataatgaaattaatgattatt 366
Query: 61 cctttggcaaagaaccagaggtacttacgtgtggtcacttcacacaaattatctggaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cctttggcaaagaaccagaggtacttacgtgtggtcacttcacacaaattatctggaaaa 426
Query: 121 atacaagagaaatcggtgtaggatgtgctaagagcaaatctggaaagttatacgttgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atacaagagaaatcggtgtaggatgtgctaagagcaaatctggaaagttatacgttgtaa 486
Query: 181 ctaattattatccaccaggaaattttagtggccagttcgtaaaaaatgttccaccgccgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctaattattatccaccaggaaattttagtggccagttcgtaaaaaatgttccaccgccgg 546
Query: 241 gcgcattgcagtttaagtcgacttcaagtttcagttcaatggattcgaattgtgaatcaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcgcattgcagtttaagtcgacttcaagtttcagttcaatggattcgaattgtgaatcaa 606
Query: 301 ataataatttaccacccccatcgccaaataagagaaacagcaaaaatataagcgacctcg 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ataataatttagcacccccatcgccaaataagagaaacagcaaaaatataagcgacctcg 666
Query: 361 ccaatgacatagttactatattccgctccacttcaattattgacaaaaattatatcgtca 420
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 667 ccaatgatatagttactatattccgctccacttcaattattgacaaaaactatatcgtca 726
Query: 421 aatttgaagcagagtttttaaaggctcataatgaatatagaagtaaacacagagtaccac 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 aatttgaagcagnnnttttaaaggctcataatgaatatagaagtaaacacagagtaccat 786
Query: 481 ctcttgaaataaata 495
|||||||||||||||
Sbjct: 787 ctcttgaaataaata 801
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 228,414
Number of extensions: 5809
Number of successful extensions: 5809
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5809
Number of HSP's successfully gapped: 1
Length of query: 1363
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1346
Effective length of database: 8,119,229
Effective search space: 10928482234
Effective search space used: 10928482234
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)