BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN12923 (UTR included)
(2905 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01006X1B04 813 0.0
>BF01006X1B04
Length = 723
Score = 813 bits (410), Expect = 0.0
Identities = 434/442 (98%)
Strand = Plus / Plus
Query: 611 gatagtgttgagcagtgatgctattaggcatagtccctcagcccgtaccagatgttcctc 670
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 282 gatagtgttgagcagtgatgctatcaggcatagtccctcagcccgtaccagatgttcctc 341
Query: 671 gagagctgactttggaggcaccgggagtgcagggggctcggagaaaaaagggaatacaga 730
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 342 gagagctgaccttggaggcaccgggagtgcagggggctcggagaaaaaagggaatacgga 401
Query: 731 atccagttctccacctccacaaccatctccgaatcctggatctcagcgagtctggtcggc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atccagttctccacctccacaaccatctccgaatcctggatctcagcgagtctggtcggc 461
Query: 791 tttagctgctttcgccatcactgtgtcactaggcggagcctacctttataagaaacgtaa 850
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 462 tttagctgcttttgccatcactgtgtcactaggcggagcttacctttataagaaacgtaa 521
Query: 851 tgataatgaactgggtgaagcacagattatcaatgacggtccaatagagaagaaaaagga 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgataatgaactgggtgaagcacagattatcaatgacggtccaatagagaagaaaaagga 581
Query: 911 gagaaagaacattgctattcccccaaccgctgcgagtcttcccactcatgtgcagtactt 970
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 582 gacaaagaacattgctattcccccaaccgctgcgagtcttccctctcatgtgcagtactt 641
Query: 971 gctagtgggtgccggtaccgcctcgttcgctgccatgagagccatcaggagcgcgcggcc 1030
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gctagtgggtgccggtaccgcctcgttcgctgccatgagagccatcaggagcgcgcggcc 701
Query: 1031 cgaagctcaggtgcttatggtc 1052
|||||| |||||||||||||||
Sbjct: 702 cgaagcccaggtgcttatggtc 723
Score = 458 bits (231), Expect = e-128
Identities = 246/252 (97%)
Strand = Plus / Plus
Query: 360 tgttagtgctctaagtctaacctgcatgttatttgtagctaaaattatgatctatgatga 419
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgttagtgctctaagtctaacctgcatgtnnnttgtagctaaaattatgatctatgatga 60
Query: 420 aatatttcgaaatgtatttaataattagaaaaaatatttaatgatttaagactttgtata 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatatttcgaaatgtatttaataattagaaaaaatatttaatgatttaagactttgtata 120
Query: 480 tgtaacatcaaacctactaatatgttaagagcagttgcaagcatttatgtcgagggtcag 539
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 121 tgtaacatcaaacctactaatatgttaagagcagttgcaagcatttatgttgagggtcag 180
Query: 540 actcttgtccggagagatgtatttaaattatttcgagcctgtgcgtactcaagttcgtca 599
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 181 actcttgtccggagagatgtatttaaattatttcgagcctgtgcatactcaagttcgtca 240
Query: 600 ccagctgagcag 611
|| |||||||||
Sbjct: 241 ccggctgagcag 252
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 311,826
Number of extensions: 7208
Number of successful extensions: 7208
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7208
Number of HSP's successfully gapped: 2
Length of query: 2905
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2887
Effective length of database: 8,109,745
Effective search space: 23412833815
Effective search space used: 23412833815
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)