BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13060 (UTR included)
(1190 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01056B2H08 846 0.0
>BF01056B2H08
Length = 827
Score = 846 bits (427), Expect = 0.0
Identities = 452/459 (98%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 376 tcatggacgtaagagagctaagaagatcgcggcgggcaaattagaagtattcagaggagt 435
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 292 tcatggacgtaagagagctaagaagatcgcggcgggcaaattagaagtat-cagaggagt 350
Query: 436 gtttgtttgatgcgttcagagtagctacaacaattcatggccggtactattcagagagtc 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gtttgtttgatgcgttcagagtagctacaacaattcatggccggtactattcagagagtc 410
Query: 496 ataccatgcttggtcagacatacggagtgtgtgtgctgcaggattttgaagctttaacac 555
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 411 ataccatgcttggtcagacatatggagtatgtgtgctgcaggattttgaagctttaacac 470
Query: 556 caaatttgatggctcgtactatagaaacagttgaaggcggcggacttattatatttctgt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 caaatttgatggctcgtactatagaaacagttgaaggcggcggacttattatatttctgt 530
Query: 616 tgaaaaccatgaattcattgagacagctgcactcaataacaatggatgttcattcaaggt 675
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 531 tgaaaactatgaattcattgagacagctgcattcaataacaatggatgttcactcaaggt 590
Query: 676 ttaagacggaggcctacgacactgttgtgaatcgtttcaatgagcgcttcctattatccc 735
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 591 ttaagacggaggcctacgacactgttgtgaatcgtttcaatgagcgcttcttattatccc 650
Query: 736 tggcggataatcctcggtgtctagttctggatgactccttgacagtacttcctatatcat 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tggcggataatcctcggtgtctagttctggatgactccttgacagtacttcctatatcat 710
Query: 796 catggactgcccaaattcaacctgttgatgttgttccgg 834
|||||||||||||||||||||||||||||||||||||||
Sbjct: 711 catggactgcccaaattcaacctgttgatgttgttccgg 749
Score = 184 bits (93), Expect = 2e-46
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 188 aggtgccaatattgtatgatatgcttttaaaatcaacagtaaaatctaggccgacagtat 247
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 195 aggtgccaatattgtatgatatgcttttaaaatcgacagtaaaatctaggccgacagtat 254
Query: 248 tgtggtgttacaaaaataaagatgaggctataagcaa 284
|||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgtggtgttacaaaaataaagatgaggctataagcaa 291
Score = 155 bits (78), Expect = 2e-37
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 aagagttttaatagaaaatggtgttaaacttggacatcggaccatgtttttacttgttgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 aagagttttaatagaaaatggtgttaaacttggacatcggaccatgtttttacttgttgg 177
Query: 61 cgataaaagtagagatcaggtg 82
|||||||||||||||| |||||
Sbjct: 178 cgataaaagtagagatgaggtg 199
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 182,985
Number of extensions: 4068
Number of successful extensions: 4068
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4067
Number of HSP's successfully gapped: 3
Length of query: 1190
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1173
Effective length of database: 8,119,229
Effective search space: 9523855617
Effective search space used: 9523855617
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)