BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13193 (UTR included)
(1402 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_976_C1 1100 0.0
>BF14_976_C1
Length = 1729
Score = 1100 bits (555), Expect = 0.0
Identities = 591/602 (98%), Gaps = 2/602 (0%)
Strand = Plus / Plus
Query: 430 agatcgactcggagcaacactctaagatactgagtttgattgaaagcggcaaacgacaag 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 agatcgactcggagcaacactctaagatactgagtttgattgaaagcggcaaacgacaag 1164
Query: 490 gagccaagctgatgaccggcggactccggcacggcgagctcgggcacttcatacagccga 549
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1165 gagccaagctgatgaccggcggactccggcacggcgagctcgggcacttcatacagccca 1224
Query: 550 ccgtgttcgccgacgtgcgagacgacatggacatcgctcggacagagatcttcgggccgg 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1225 ccgtgttcgccgacgtgcgagacgacatggacatcgctcggacagagatcttcgggccgg 1284
Query: 610 tgcagcaaatcatcaaattctccaagatcgacgagctactggagcgcgcgaacaacaccg 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 tgcagcaaatcatcaaattctccaagatcgacgagctactggagcgcgcgaacaacaccg 1344
Query: 670 aatacggcttagccgcggccgtcttcaccaaggacatcgacagagccaactacttgatcc 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 aatacggcttagccgcggccgtcttcaccaaggacatcgacagagccaactacttgatcc 1404
Query: 730 agggtctccgcgccgggaccgtgtgggtcaatgactacaacgtcttcggccagcaagtgc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 agggtctccgcgccgggaccgtgtgggtcaatgactacaacgtcttcggccagcaagtgc 1464
Query: 790 cgttcggcggatacaaacaatctggactgggaagagaaaacggaccctacggcatcaaga 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 cgttcggcggatacaaacaatctggactgggaagagaaaacggaccctacggcatcaaga 1524
Query: 850 actacacggaagtgaaggccgtggtgatcaagatgcagcagaaaaactcatagacacaag 909
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 actatacggaagtgaaggccgtggtgatcaagatgcagcagaaaaactcatagacacaag 1584
Query: 910 gaccagttactacagactatactatataagttatcagtgaggcgccgcacatttccgcta 969
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1585 gaccagttactacggactatactatataagttatcagtgaggcgccgcacatttcttcca 1644
Query: 970 tcccactactatatgtattatttt--tatacagtgacatcaataaaaatgttatattaat 1027
| |||||||||||||||||||||| |||||||||||||||||||||| | |||||||||
Sbjct: 1645 taccactactatatgtattatttttatatacagtgacatcaataaaaaaggtatattaat 1704
Query: 1028 ta 1029
||
Sbjct: 1705 ta 1706
Score = 214 bits (108), Expect = 3e-55
Identities = 117/120 (97%)
Strand = Plus / Plus
Query: 87 gggtcccgaacgttcgtcgaggaatcaatttatgacaagttcgtggaaatgtcggccgct 146
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 gggtcccgaaccttcgtcgaggaatcaatttatgacaagttcgtggaaatgtcggccgct 1046
Query: 147 cgcgccgccaggaggaaggtgggcgatcccttcaaacccgacacggagcagggaccgcag 206
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 1047 cgcgccgccaggaggaaggtgggagatcccttcaaacccgacacggaacagggaccgcag 1106
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 145,427
Number of extensions: 2927
Number of successful extensions: 2927
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2926
Number of HSP's successfully gapped: 2
Length of query: 1402
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1385
Effective length of database: 8,119,229
Effective search space: 11245132165
Effective search space used: 11245132165
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)