BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13289 (UTR included)
(2884 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01023B1D11 509 e-144
BF01013B1G06 355 3e-97
BF01028A1C12 297 5e-80
>BF01023B1D11
Length = 725
Score = 509 bits (257), Expect = e-144
Identities = 263/265 (99%)
Strand = Plus / Plus
Query: 2620 aatgaaatcaaccgttatgtaacctcgtagtataaaaagatagagggtattattaaaaaa 2679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatgaaatcaaccgttatgtaacctcgtagtataaaaagatagagggtattattaaaaaa 60
Query: 2680 tacaataacgcaattctatttttttgttataatatattacatacaggaaatattcatatt 2739
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tacaataacgcaattttatttttttgttataatatattacatacaggaaatattcatatt 120
Query: 2740 aattgattcagttaatacaacagcgcccctagtgagcaaatgcgcaaacttacgtttgaa 2799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattgattcagttaatacaacagcgcccctagtgagcaaatgcgcaaacttacgtttgaa 180
Query: 2800 ccttgataagatatgacggactgtgatggcgctagtcttcgagatatttcccccattttg 2859
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcgataagatatgacggactgtgatggcgctagtcttcgagatatttcccccattttg 240
Query: 2860 ataatgaagtgtcaaaataggaact 2884
|||||||||||||||||||||||||
Sbjct: 241 ataatgaagtgtcaaaataggaact 265
>BF01013B1G06
Length = 838
Score = 355 bits (179), Expect = 3e-97
Identities = 185/187 (98%)
Strand = Plus / Minus
Query: 769 agacggacgtggaggtgtttcggaaggactccaagaagctgcccatcggagacccggaga 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 agacggacgtggaggtgtttcggaaggactccaagaagctgcccatcggagacccggaga 694
Query: 829 tcgattgggaggagaccgtctatctgaacctgatcgtgcaccagttcgactatacgctca 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcgattgggaggagaccgtctatctgaacctgatcgtgcaccagttcgactatacgctca 634
Query: 889 cgctggccatctgcacccgcaccagccccaaggagctgcaagtgctgaagcggcattctc 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 633 cgctggccatctgcacccgcaccagccccaaggagctgcaagtgctgaagcggcactctc 574
Query: 949 aaaaggt 955
| |||||
Sbjct: 573 agaaggt 567
>BF01028A1C12
Length = 710
Score = 297 bits (150), Expect = 5e-80
Identities = 159/162 (98%)
Strand = Plus / Minus
Query: 609 gattctgggttcgtggtgcttcaaggaactacttattggacagatcttttcgtgaggcat 668
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gattctgggtttgtggtgcttcaaggaactacttattggacagatcttttcgtgaggcat 389
Query: 669 ttcctattccaagaagagcaatccatcgactgtgatgatctactgttctttgttcgtaag 728
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ttcctatttcaagaagagcaatccatcgactgtgatgatctactgttctttgttcgtaag 329
Query: 729 cgtcacgtcaagggctcgtcgcgctatttgcctaaatacgag 770
|||||||||||||||||||||||||||||||| |||||||||
Sbjct: 328 cgtcacgtcaagggctcgtcgcgctatttgccaaaatacgag 287
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 306,033
Number of extensions: 7288
Number of successful extensions: 7288
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 7288
Number of HSP's successfully gapped: 3
Length of query: 2884
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2867
Effective length of database: 8,119,229
Effective search space: 23277829543
Effective search space used: 23277829543
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)