BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13298 (UTR included)
(4735 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_1274_C1 1134 0.0
>BF14_1274_C1
Length = 1279
Score = 1134 bits (572), Expect = 0.0
Identities = 578/580 (99%)
Strand = Plus / Plus
Query: 4141 atgggttcgcgttctctcaagaggagggcgcgagtgtctcccaggcggacgtcattcgcg 4200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atgggttcgcgttctctcaagaggagggcgcgagtgtctcccaggcggacgtcattcgcg 452
Query: 4201 cctacgacacgcgacagccgcgttcgcgcacttaagacgaacagacaaacatacaaacac 4260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 453 cctacgacacgcgacagccgcgttcgcgcacttaagacgaacagacaaacatgcaaacac 512
Query: 4261 agacgaaaacacatttattcacacaaacaaacccacaattacattcttccagcgacatca 4320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agacgaaaacacatttattcacacaaacaaacccacaattacattcttccagcgacatca 572
Query: 4321 aatatattcagtagccgccattattacctactgctgtcaaacataatgtgacttaaatca 4380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 aatatattcagtagccgccattattacctactgctgtcaaacataatgtgacttaaatca 632
Query: 4381 gtgttgacagtataaaaaatgtatgtttaaattttattgtctcagtaatacatttaaata 4440
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 633 gtgttgacagtataaaaaatgtatgtttaaattttattgtctcaataatacatttaaata 692
Query: 4441 cggctatcatagtattatataatttaaaacattgtttttataaatattttacaagcttga 4500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 cggctatcatagtattatataatttaaaacattgtttttataaatattttacaagcttga 752
Query: 4501 tgatgataacattgatattaattgaaatatttcgtgaggttagtacagtaaaataaaaac 4560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 tgatgataacattgatattaattgaaatatttcgtgaggttagtacagtaaaataaaaac 812
Query: 4561 gaccaaagataatttcgaatatatttataagatcggtaataatttaagagtttttaaata 4620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 gaccaaagataatttcgaatatatttataagatcggtaataatttaagagtttttaaata 872
Query: 4621 aaataaaaatttatgtaattttgatcgttatattatattaattgttttaatttgtcgtta 4680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 aaataaaaatttatgtaattttgatcgttatattatattaattgttttaatttgtcgtta 932
Query: 4681 aagcttaatttattatttagttatgactagttgcgattat 4720
||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 aagcttaatttattatttagttatgactagttgcgattat 972
Score = 172 bits (87), Expect = 3e-42
Identities = 90/91 (98%)
Strand = Plus / Plus
Query: 4050 cgcaccctgacggagacggcgcgcctgctgcagaacgtgcgcagtgtgttcggtcgacgc 4109
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 cgcagcctgacggagacggcgcgcctgctgcagaacgtgcgcagtgtgttcggtcgacgc 81
Query: 4110 ggccagagacacaccgagctggaactatcac 4140
|||||||||||||||||||||||||||||||
Sbjct: 82 ggccagagacacaccgagctggaactatcac 112
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 444,525
Number of extensions: 9290
Number of successful extensions: 9290
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 9290
Number of HSP's successfully gapped: 2
Length of query: 4735
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4717
Effective length of database: 8,109,745
Effective search space: 38253667165
Effective search space used: 38253667165
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)