BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13328 (UTR included)
(3148 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01020A1F03 1181 0.0
>BF01020A1F03
Length = 739
Score = 1181 bits (596), Expect = 0.0
Identities = 605/609 (99%)
Strand = Plus / Plus
Query: 1060 tgtacggcagcgatgaattcgggcacgattcaccctccagatacgcgtctccgaagggcg 1119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tgtacggcagcgatgaattcgggcacgattcaccctccagatacgcgtctccgaagggcg 190
Query: 1120 ccggcgccagtgctggctatcaggagccctactacggggagtgggcggcggggtactacc 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccggcgccagtgctggctatcaggagccctactacggggagtgggcggcggggtactacc 250
Query: 1180 agccgccgccgccctatcatcatgatccgtacgcgacgtcgccgggcatatccggtgcgc 1239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 nnncgccgccgccctatcatcatgatccgtacgcgacgtcgccgggcatatccggtgcgc 310
Query: 1240 ccacggacgcgagcgcgggcggggcggagctgcctctgccgcccatgtcgtcgttccgcg 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccacggacgcgagcgcgggcggggcggagctgcctctgccgcccatgtcgtcgttccgcg 370
Query: 1300 ccgccgcccccgtacactcgcccagcgaccccatgatagtcgccaagccgcccatgcaac 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccgccgcccccgtacactcgcccagcgaccccatgatagtcgccaagccgcccatgcaac 430
Query: 1360 cgatgtacgcggggtcggcaaacaccccatcgggcggcggcgagggcggaggaccagcgg 1419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cgatgtacgcggggtcggcaaacaccccatcgggcggcggcgagggcggaggaccagcgg 490
Query: 1420 gcgggccgggcgccggaagcctgtcctcgtactcgtctccctccacgccggtgcactcgc 1479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 gcgggccgggcgccggaagcctgtcctcgtactcgtctccctccacgccggtgcactcgc 550
Query: 1480 ccccgccgctacacgccaggctctaccccatgaaacactccccgcaccaccaccaccacc 1539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ccccgccgctacacgccaggctctaccccatgaaacactccccgcaccaccaccaccacc 610
Query: 1540 ataacggacagcaagcgagctgggtatccacgggtgtgtcgtccccacccacggcggcga 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 ataacggacagcaagcgagctgggtatccacgggtgtgtcgtccccacccacggcggcga 670
Query: 1600 cgccccacgcgcctctgacgggagctgtactcccgaatggtcaccagcacgtcgtgttcc 1659
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 671 cgccccacgcgcctctgacgggagctgtactcccgaacggtcaccagcacgtcgtgttcc 730
Query: 1660 cacccgtta 1668
|||||||||
Sbjct: 731 cacccgtta 739
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 261,843
Number of extensions: 10738
Number of successful extensions: 10738
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 10735
Number of HSP's successfully gapped: 1
Length of query: 3148
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3130
Effective length of database: 8,109,745
Effective search space: 25383501850
Effective search space used: 25383501850
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)