BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13330 (UTR included)
(3238 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_2196_C1 1376 0.0
>BF14_2196_C1
Length = 1199
Score = 1376 bits (694), Expect = 0.0
Identities = 724/734 (98%)
Strand = Plus / Plus
Query: 1682 ggagcgagccccctgcgtcatattcattgacgagatagattcagtgggtgccaaacgtac 1741
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggagccagtcccctgcgtcatattcattgacgagatagattcagtgggtgccaaacgtac 60
Query: 1742 caacagcgtgctgcatccgtacgccaaccagacaataaaccaactcttatcagagatgga 1801
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 61 caacagcgtgctgcatccgtacgccaaccagacaataaaccagctcttatcagagatgga 120
Query: 1802 tggattccatcagaacgagggtgtgatagtgctgggcgccaccaacaggagagacgacct 1861
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tggattccatcagaacgagggagtgatagtgctgggcgccaccaacaggagagacgacct 180
Query: 1862 ggaccaggccctgctgagacctggaagattcgatgtcgaagtgtccgtaccaacaccaga 1921
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggaccaggccctgctgagacctggaagattcgatgtcgaagtgtccgtaccaacaccaga 240
Query: 1922 ctacggtggtcgtctggagatactgcggatgtacgtgtcgagggtcgcggctgccccggg 1981
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctacggtggtcgcctggagatactgcggatgtacgtgtcgagggtcgcggctgccccggg 300
Query: 1982 gctggacgtggaatccctagccaggggtaccacgggattcacgggcgctgacctcgagag 2041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctggacgtggaatccctagccaggggtaccacgggattcacgggcgctgacctcgagag 360
Query: 2042 tatggtcaaccaggcagcactcaaggcagccatcgagggcgccaaaactgtgagcatgta 2101
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 361 tatggtcaaccaggcagcactcaaggcagccatcgagggcgccaagactgtgagcatgta 420
Query: 2102 ccacctggaggaggcgagggacaaggtgctcatgggcccggcgagaagagcgaggctacc 2161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccacctggaggaggcgagggacaaggtgctcatgggcccggcgagaagagcgaggctacc 480
Query: 2162 cgacgacgaggccaacgctatcaccgcctgccacgagggcgggcatgcggtggtagcgta 2221
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 481 cgacgacgaggccaacgctatcaccgcctgccacgagggcggacatgcggtggtggcgta 540
Query: 2222 ctacactaaggattctcacccacttcacaaggtcaccataataccacgcggaccttccct 2281
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 541 ctacactaaggattctcatccacttcataaggtcaccataataccacgcggaccttccct 600
Query: 2282 gggacacacagcctacataccggccaaagaaagatatcacgtgacgaaacaacaactcct 2341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gggacacacagcctacataccggccaaagaaagatatcacgtgacgaaacaacaactcct 660
Query: 2342 ggctatgatggacaccatgatgggcgggcgggcggccgaggaactggtctacggaccgga 2401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ggctatgatggacaccatgatgggcgggcgggcggccgaggaactggtctacggaccgga 720
Query: 2402 taagattacatcgg 2415
||||||||||||||
Sbjct: 721 taagattacatcgg 734
Score = 486 bits (245), Expect = e-136
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 2496 gtggatgctgaaataaagaaaattctatcagagagctacgaaagagctaaggccatactg 2555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 gtggatgctgaaataaagaaaattctatcagagagctacgaaagagctaaggccatactg 940
Query: 2556 aggacgcacgctaaagaacataaggctctgtcggaagccttattaaaatacgagactctg 2615
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 941 aggacgcacgctaaagaacataaggctctgtcagaagccttattaaaatacgagactctg 1000
Query: 2616 gacgctgacgacatcaaagcgatcatgtcaggagacaaggtgaagatggaccgaggtaga 2675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 gacgctgacgacatcaaagcgatcatgtcaggagacaaggtgaagatggaccgaggtaga 1060
Query: 2676 agcagcaacactaataaggagccctcgcccgccacgctgctgccgcacacgatgcccgct 2735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 agcagcaacactaataaggagccctcgcccgccacgctgctgccgcacacgatgcccgct 1120
Query: 2736 tagataatg 2744
|||||||||
Sbjct: 1121 tagataatg 1129
Score = 99.6 bits (50), Expect = 3e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 3183 gaaacagaagctgacgggacgaccggaagttcgtcatatgacaacacaaccaaaac 3238
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1129 gaaacagaagctgacgggacgaccggaagttcgtcatatgacnncacaaccaaaac 1184
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 366,605
Number of extensions: 8451
Number of successful extensions: 8451
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 8451
Number of HSP's successfully gapped: 3
Length of query: 3238
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3220
Effective length of database: 8,109,745
Effective search space: 26113378900
Effective search space used: 26113378900
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)