BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13334 (UTR included)
(1354 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 319 6e-87
BF01060B1D11 281 1e-75
BF01031B2E06 68 4e-11
>BF01047B2H03
Length = 758
Score = 319 bits (161), Expect = 6e-87
Identities = 273/309 (88%), Gaps = 1/309 (0%)
Strand = Plus / Minus
Query: 108 gatgagtctaaaaaggctatcggggctctataaacacctgagagtttccaagagatacat 167
||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||| | ||
Sbjct: 758 gatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagacatat 699
Query: 168 cctggggaaatcccatgatgacgtcgttgcatcgctcccaaaagacaaagatgccccaga 227
|| ||||||| ||||| |||| ||| || |||| ||| ||||| | | ||||||||| ||
Sbjct: 698 cccggggaaagcccataatgatgtcattacatcactctcaaaaaatagagatgcccctga 639
Query: 228 gctagagtcaaggcttcaattccacaagcaatttatgataggaaaacaaagtaac-agag 286
||| ||||||| ||||||||||| || || |||||||||||| |||||||||| ||||
Sbjct: 638 actaaagtcaagacttcaattccataaacagtttatgataggagcacaaagtaacgagag 579
Query: 287 tagggttaggatcaagtaagaaggtccaagatacggatatattgaagtcttttattcggc 346
|||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 taggattaggatcaaggaagaaggcccaagatacggatatattgaagtcttttattcggc 519
Query: 347 aagacgtgaatgataaatataagatccatgcaataagtttagaaatgcagaacgagtggt 406
|||||| ||||||| |||||| ||||||||||| |||||||| ||||||||||||||||
Sbjct: 518 aagacgagaatgatggatataacatccatgcaatgagtttagatatgcagaacgagtggt 459
Query: 407 tagacatag 415
|||||||||
Sbjct: 458 tagacatag 450
Score = 89.7 bits (45), Expect = 1e-17
Identities = 75/85 (88%)
Strand = Plus / Minus
Query: 555 acttgctatatctatgggaaggcagttggaattgctaggcatttgttggtgggatgtagg 614
||||||||||||| | | ||||||||||||||||| ||||||| || |||||||||||
Sbjct: 364 acttgctatatctgcgaggaggcagttggaattgctgagcatttgctgatgggatgtagg 305
Query: 615 gtactcctcgatagcggtcaatact 639
||||||| ||||||||||||||||
Sbjct: 304 ctactcctggatagcggtcaatact 280
>BF01060B1D11
Length = 799
Score = 281 bits (142), Expect = 1e-75
Identities = 273/314 (86%), Gaps = 2/314 (0%)
Strand = Plus / Minus
Query: 104 ttgggatgagtctaaaaaggctatcggggctctataaacacctgagagtttccaagagat 163
||||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||
Sbjct: 591 ttgggatgagtctaaaaaggccatcggagctctataaacacttaagagtttccaagagac 532
Query: 164 acatcctggggaaatcccatgatgacgtcgttgcatcgctcccaaaagacaaagatgccc 223
| |||| ||||||| ||||| |||| ||| || |||| ||||||||| | ||||| ||
Sbjct: 531 atatcccggggaaagcccataatgatgtcattacatcactcccaaaaaccggagatggcc 472
Query: 224 cagagctagagtca-aggcttcaattccacaagcaatttatgataggaaaacaaagtaac 282
|||| ||| |||| || |||||||||||||| || |||||||||||| ||||||||||
Sbjct: 471 cagaactaaagtctgagacttcaattccacaaacagtttatgataggagcacaaagtaac 412
Query: 283 -agagtagggttaggatcaagtaagaaggtccaagatacggatatattgaagtcttttat 341
|||||||| ||||||||||| ||||||| ||||||| |||||||||||||| ||||||
Sbjct: 411 gagagtaggattaggatcaaggaagaaggctcaagatatggatatattgaagtattttat 352
Query: 342 tcggcaagacgtgaatgataaatataagatccatgcaataagtttagaaatgcagaacga 401
|| |||||||| ||||||| |||||||||||||||||| ||||||| |||||||||||
Sbjct: 351 tcagcaagacgagaatgatggatataagatccatgcaatgcgtttagagatgcagaacga 292
Query: 402 gtggttagacatag 415
||||||||||||||
Sbjct: 291 gtggttagacatag 278
Score = 93.7 bits (47), Expect = 7e-19
Identities = 99/116 (85%), Gaps = 4/116 (3%)
Strand = Plus / Minus
Query: 508 tcccagatcaaagtaatttagtaaga----tggggtaaaagtaccgaaaagacttgctat 563
|||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct: 234 tcccagatcagagtaatttagtaagacgggaggggtaaagataccgaaaaaacttgctat 175
Query: 564 atctatgggaaggcagttggaattgctaggcatttgttggtgggatgtagggtact 619
|| | | |||||||||||||||||||| ||||||| || ||||||||||| ||||
Sbjct: 174 atttgcgagaaggcagttggaattgctaagcatttgctgatgggatgtaggctact 119
>BF01031B2E06
Length = 707
Score = 67.9 bits (34), Expect = 4e-11
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 681 gaaaccaacatcaacaaagaccatgccatcaaggtcaataaatattacga 730
|||||||||||| ||||||||||||||||||| ||||||| ||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacga 485
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 179,555
Number of extensions: 4067
Number of successful extensions: 4067
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4064
Number of HSP's successfully gapped: 5
Length of query: 1354
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1337
Effective length of database: 8,119,229
Effective search space: 10855409173
Effective search space used: 10855409173
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)