BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13345 (UTR included)
(3496 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01005B2A02 1487 0.0
>BF01005B2A02
Length = 799
Score = 1487 bits (750), Expect = 0.0
Identities = 781/793 (98%), Gaps = 1/793 (0%)
Strand = Plus / Plus
Query: 311 atacttaatccattttttttagaaaagtttttaaaatgttgttttctttttaaattctta 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 atacttaatccattttttttagaaaagtttttaaaatgttgttttctttttaaattctta 66
Query: 371 aaactgg-ttttaaaatatcggtaattaatttgggtatcgagactataaatgggaataaa 429
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aaacnnnnttttaaaatatcggtaattaatttgggtatcgagactataaatgggaataaa 126
Query: 430 tatgtaaagtttaataaaacttcggtataaacatcccacattgttaatttaattttcaaa 489
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 127 tatgtaaagtttaataaaacttcggtattaacatcccacattgttaatttaattttcaaa 186
Query: 490 cattttaagaaatgggttcttctgatataaaacttatagaaaggctgagaaacgaaaatt 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 cattttaagaaatgggttcttctgatataaaacttatagaaaggctgagaaacgaaaatt 246
Query: 550 tggagcagttttttacattagtgcgcatgcatttatcttttgtagttgacattaatactg 609
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 247 tggagcagttttttacattagtgcggatgcatttatcttttgtagttgacattaatactg 306
Query: 610 acgaggtcgattgttcggcggataaaccaaagcaattcaggtggaactttcacaagaaaa 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 acgaggtcgattgttcggcggataaaccaaagcaattcaggtggaactttcacaagaaaa 366
Query: 670 ctaaaacacacagttctaatctagtatctagtcaaaataatgttcatagtacaaagaaag 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctaaaacacacagttctaatctagtatctagtcaaaataatgttcatagtacaaagaaag 426
Query: 730 ctgaagaggctaattctatcacagaagagggaattttgagattatatgagttgatagaat 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctgaagaggctaattctatcacagaagagggaattttgagattatatgagttgatagaat 486
Query: 790 ttctttcccaacctgacaatgttacacaggagggtatattccgtcggacaggttcactaa 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttctttcccaacctgacaatgttacacaggagggtatattccgtcggacaggttcactaa 546
Query: 850 accgtcaacaagagttacgccagctccttgtcaccggttcgagtctcggtttagatgaca 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 accgtcaacaagagttacgccagctccttgtcaccggttcgagtctcggtttagatgaca 606
Query: 910 gcaagttttctgttcatgattgtgcatctgttctcaaaggattcttggctgaacttcccc 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gcaagttttctgttcatgattgtgcatctgttctcaaaggattcttggctgaacttcccc 666
Query: 970 aaccattgcttatggatcagtattatcaaacctactgcacattggcctctcaatacccgc 1029
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aaccattgcttatggatcagtattatcaaacctactgcacattggcctctcaatacccgc 726
Query: 1030 ccaatgctgaatcgtcagaggagaaacttttaactgcattacagttattattattgctgc 1089
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 727 ccaatgctgaatcgtcagnnnnnnaacttttaactgcattacagttattattattgctgc 786
Query: 1090 tggcgccatctca 1102
|||||||||||||
Sbjct: 787 tggcgccatctca 799
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 400,144
Number of extensions: 7387
Number of successful extensions: 7387
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7386
Number of HSP's successfully gapped: 2
Length of query: 3496
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3478
Effective length of database: 8,109,745
Effective search space: 28205693110
Effective search space used: 28205693110
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)