BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13443 (UTR included)
(1479 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01057A2D10 916 0.0
BF01030A2F11 367 e-101
BF01059B2E01 90 1e-17
>BF01057A2D10
Length = 835
Score = 916 bits (462), Expect = 0.0
Identities = 498/510 (97%), Gaps = 4/510 (0%)
Strand = Plus / Plus
Query: 670 aggttccgtaaacagtttgacagcggacgaagtgatcagtaaagtacgtccgttggccgt 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aggttccgtaaacagtttgacagcggacgaagtgatcagtaaagtacgtccgttggccgt 385
Query: 730 cgagtcccccgtcaaacccagcttcaacggcttgaactgccagcgttcagactcggctgc 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 cgagtcccccgtcaaacccagcttcaacggcttgaactgccagcgttcagactcggctgc 445
Query: 790 cagacaagttgcttacaagggtgactgccagcgctactggcgctgcgtcaatggcgtcct 849
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 446 cagacaagttgcttacaagggtgactgccagcgctactggcgctgcatcaatggcgtcct 505
Query: 850 gcagacagcgtattgttccgatggacttttcttcaacgagcgttctggacaatgcgactt 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gcagacagcgtattgttccgatggacttttcttcaacgagcgttctggacaatgcgactt 565
Query: 910 cgaagctaacgttaaatgcgccgacgttaacgacgaattggaaaacgaatttatcgttta 969
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 cgaagccaacgttaaatgcgccgacgttaacgacgaattggaaaacgaatttatcgttta 625
Query: 970 caagaagtaaaaaatgtt----ataaacgaaatgacgttcgcaatatttgaataccggaa 1025
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct: 626 caagaagtaaaaaattttataaataaacgaaatgacgttcgcaatatttgaataccggaa 685
Query: 1026 ctttgctattttgacatttgattttgttgatgacagatcgagttcgttctttaaacagat 1085
|||||||||||||||||||||||||||| ||||||| ||||||| |||||||| ||||||
Sbjct: 686 ctttgctattttgacatttgattttgttaatgacagttcgagtttgttctttacacagat 745
Query: 1086 gctatcaggaaaagttttttttaattttttacaaacaaagagtttatatgcatagttaaa 1145
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 746 gctatcaggaaaagttttttttaatnttttacaaacaaagagtttatatgcatagttaaa 805
Query: 1146 aaattaattattttttacatcagtattttt 1175
||||||||||||||||||||||||||||||
Sbjct: 806 aaattaattattttttacatcagtattttt 835
>BF01030A2F11
Length = 277
Score = 367 bits (185), Expect = e-101
Identities = 243/265 (91%), Gaps = 13/265 (4%)
Strand = Plus / Minus
Query: 1047 ttttgttgatgacagatcgagttcgttctttaaacagatgctatcaggaaaagttttttt 1106
|||| |||||| ||| | |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tttttttgatgccagttagagttcgttctttacacagatgctatcaggaaaagttttttt 206
Query: 1107 taattttttacaaacaaagagtttatatgcatagttaaaaaattaattattttttacatc 1166
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 taattttttacaaacaaagagtttatatgcatagttaaaaaattaattaaattttacatc 146
Query: 1167 agtatttttcaatattccgctaa-------------ttgttaatacgggatccaacataa 1213
||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 145 agtatttttcaatattccgctaattgtgcataattgttgttaatacgggatccaacacaa 86
Query: 1214 atgtaatgctgtcatattacatgtcgtatgtataatagcaattattatgtttgctttaaa 1273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atgtaatgctgtcatattacatgtcgtatgtataatagcaattattatgtttgctttaaa 26
Query: 1274 gctttaatatttattgtgttttttt 1298
|||||||||||||| ||||||||||
Sbjct: 25 gctttaatatttatcgtgttttttt 1
>BF01059B2E01
Length = 596
Score = 89.7 bits (45), Expect = 1e-17
Identities = 109/128 (85%), Gaps = 3/128 (2%)
Strand = Plus / Plus
Query: 147 agagagaaatgtata-gtgtgttataacaaaacatatagtaacttacgtcgcagcctttc 205
||||||||||||||| ||| |||| ||||| |||| ||||||| ||||| ||| | |||
Sbjct: 270 agagagaaatgtataagtgagttaaaacaatacatttagtaacctacgttgcaacgtttt 329
Query: 206 cattt--aataacctagatagcgactgcagcgccatctgctggactgatgtgtgactcta 263
||||| |||||| |||||| ||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 330 cattttaaataacttagataccgactgcagcgccatctgccgggctgatatgttaatcta 389
Query: 264 aaccatct 271
||||||||
Sbjct: 390 aaccatct 397
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 217,630
Number of extensions: 6006
Number of successful extensions: 6006
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 6004
Number of HSP's successfully gapped: 4
Length of query: 1479
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1462
Effective length of database: 8,119,229
Effective search space: 11870312798
Effective search space used: 11870312798
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)