BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13508 (UTR included)
(2347 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01050A1A04 1540 0.0
>BF01050A1A04
Length = 803
Score = 1540 bits (777), Expect = 0.0
Identities = 780/781 (99%)
Strand = Plus / Plus
Query: 481 ccaggcaaaacaaaataacaatggaagaaagacatagacgtgccatacaacagaatttta 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 ccaggcaaaactaaataacaatggaagaaagacatagacgtgccatacaacagaatttta 82
Query: 541 cttccctggtggagcagaccgacttggatatgatggtgtcagccttgtatgagaggggtg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cttccctggtggagcagaccgacttggatatgatggtgtcagccttgtatgagaggggtg 142
Query: 601 tgttctcggagcagatgattgaacagtataaggacgtgagtaaagatgtaagatatcgca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tgttctcggagcagatgattgaacagtataaggacgtgagtaaagatgtaagatatcgca 202
Query: 661 aacggcttttatacatggacgtgacgaggagaggccctcaagcgttcggtcacctgctgg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aacggcttttatacatggacgtgacgaggagaggccctcaagcgttcggtcacctgctgg 262
Query: 721 acgccttgttcgaggctggccactggaacctcgtgcgggatctggacccccacagtgcgc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acgccttgttcgaggctggccactggaacctcgtgcgggatctggacccccacagtgcgc 322
Query: 781 tacacagcaggcctcaaacgacccggcgtcccttaccagacacgagttcacattcgagcg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tacacagcaggcctcaaacgacccggcgtcccttaccagacacgagttcacattcgagcg 382
Query: 841 agaacaacttcgttagtatcagtgcccagaaaaagaaaacgaagagtgtcccagagccgg 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 agaacaacttcgttagtatcagtgcccagaaaaagaaaacgaagagtgtcccagagccgg 442
Query: 901 caaaaagtccgcgccggcacactcccgccaccagctcgcccggcccggacgaggcggagg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 caaaaagtccgcgccggcacactcccgccaccagctcgcccggcccggacgaggcggagg 502
Query: 961 acacggcggagataccgcagatcgacgtcgtgaagtcgaccaagttctacgaggacggac 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acacggcggagataccgcagatcgacgtcgtgaagtcgaccaagttctacgaggacggac 562
Query: 1021 acgacatcaagctgtaccgcacgcgaggccgcaaccgaggcgtgctggtcgtcttcacgt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acgacatcaagctgtaccgcacgcgaggccgcaaccgaggcgtgctggtcgtcttcacgt 622
Query: 1081 acatcgagttcctccacaacacggcctcctaccggcgcggcgcggacgtggactgccagc 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acatcgagttcctccacaacacggcctcctaccggcgcggcgcggacgtggactgccagc 682
Query: 1141 ggctcaagtacctgttcaacgagctcggcttcaaggtgctctcctacatcaacctcaccg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ggctcaagtacctgttcaacgagctcggcttcaaggtgctctcctacatcaacctcaccg 742
Query: 1201 agagcgagacgtggaacacgctgcactcgctcaaggaggtggtcgccggcgtggactgcg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agagcgagacgtggaacacgctgcactcgctcaaggaggtggtcgccggcgtggactgcg 802
Query: 1261 t 1261
|
Sbjct: 803 t 803
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 267,175
Number of extensions: 5437
Number of successful extensions: 5437
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5437
Number of HSP's successfully gapped: 1
Length of query: 2347
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2330
Effective length of database: 8,119,229
Effective search space: 18917803570
Effective search space used: 18917803570
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)