BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13563 (UTR included)
(3004 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01009B2E02 1544 0.0
BF01057B2E10 428 e-119
BF01059B1A05 224 6e-58
>BF01009B2E02
Length = 807
Score = 1544 bits (779), Expect = 0.0
Identities = 799/807 (99%)
Strand = Plus / Plus
Query: 489 cgcgcctcaatgatgtctcccagacaactgatgcgcaactcaaacatgacacagaagtgg 548
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgcgcctcattgatgtctcccagacaactgatgcgcaactcaaacatgacacagaagtgg 60
Query: 549 caacgcagggagatatccaacttcgagtatttaatgttcctcaacacaatcgccggccgt 608
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caacgcagggaaatatccaacttcgagtatttaatgttcctcaacacaatcgccggccgt 120
Query: 609 acttacaatgacctgaatcagtacccggttttcccctgggtgttgaccaactacgagagc 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 acttacaatgacctgaatcagtacccggttttcccctgggtgttgaccaactacgagagc 180
Query: 669 gaagagttggatctcagccagccctccaactaccgagatctgtccaagcccatcggagcc 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaagagttggatctcagccagccctccaactaccgagatctgtccaagcccatcggagcc 240
Query: 729 ctgaacccaagtcggcgcgcgtacttcgaggatcgctacaacacgtgggagcacgagtcg 788
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgaacccaagtcgccgcgcgtacttcgaggatcgctacaacacgtgggagcacgagtcg 300
Query: 789 acgccgcccttccactacgggacccactactccaccgccgcattcgtcctcaattggctc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 acgccgcccttccactacgggacccactactccaccgccgcattcgtcctcaattggctc 360
Query: 849 gtacgaattgaaccgatgacaaccatgttcctggctctgcacgggggaaaattcgatcac 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtacgaattgaaccgatgacaaccatgttcctggctctgcacgggggaaaattcgatcac 420
Query: 909 ccaaacagactgttctcatccatcgcaatgtcttggaagaactgtcagagagacacctcc 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaaacagactgttctcatccatcgcaatgtcttggaagaactgtcagagagacacctcc 480
Query: 969 gatgttaaggaactcattccagagttattcttcctaccggaaatgcttgtgaatagttct 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gatgttaaggaactcattccagagttattcttcctaccggaaatgcttgtgaatagttct 540
Query: 1029 ggatacaagctggggatagcggagtctccctccggtgacgtgttgctcccgccctgggca 1088
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 541 ggatacaagctggggatagcggagtctccttccggtgacgtgttgctcccgccctgggca 600
Query: 1089 tcgtcagccgaggagttcgtgaggatcaacagaatggccttggagtctgagtttgtcagc 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcgtcagccgaggagttcgtgaggatcaacagaatggccttggagtctgagtttgtcagc 660
Query: 1149 tgccaactacaccagtggatagatttaatatttggctataaacaacgaggccctgaggcg 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tgccaactacaccagtggatagatttaatatttggctataaacaacgaggccctgaggcg 720
Query: 1209 gtccgagcgaccaacgtgttctattacctcacgtacgagggaggagctcgtatcgaccag 1268
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 721 gtccgagcgaccaacgtgttctattacctcacgtacgnnngnggagctcgtatcgaccag 780
Query: 1269 atccccgaccccctcactcgggccgct 1295
|||||||||||||||||||||||||||
Sbjct: 781 atccccgaccccctcactcgggccgct 807
>BF01057B2E10
Length = 230
Score = 428 bits (216), Expect = e-119
Identities = 222/224 (99%)
Strand = Plus / Plus
Query: 2639 ttttatttttgctaaagcgttcgtaaaaacaattagaatgcctgaaaacattaactgcac 2698
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ttttttttttgctaaagcgttcgtaaaaacaattagaatgcctgaaaacattaactgcac 66
Query: 2699 tcatctgttacattgttataataatattttatcacaatgcctctgcaaaaacatgatttt 2758
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 67 tcatctgttacattgttataataatattttgtcacaatgcctctgcaaaaacatgatttt 126
Query: 2759 tggattcgtgtaatcgatgtgcaatttaaatttaacgaagaactgcaaacaaagtcaatg 2818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tggattcgtgtaatcgatgtgcaatttaaatttaacgaagaactgcaaacaaagtcaatg 186
Query: 2819 ttagatctaaccaatgttgactccgttaacacgagccgcggagc 2862
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ttagatctaaccaatgttgactccgttaacacgagccgcggagc 230
>BF01059B1A05
Length = 213
Score = 224 bits (113), Expect = 6e-58
Identities = 127/131 (96%), Gaps = 3/131 (2%)
Strand = Plus / Minus
Query: 2871 cgccgggtgcgcgtgtagtattaagtgaaattttatatttataacattccaatattatgt 2930
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 213 cgccgggtgcgcgtgtagtattaagtgaaattttgtatttataacattccaatattatgt 154
Query: 2931 tgtttactttaatttgtataaaatgaattatttcttttatcaagattattttaattagtg 2990
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 t---tactttaatttgtataaaatgaattatttcttttatcaagattattttaattagtg 97
Query: 2991 ccatgcaaatt 3001
|||||||||||
Sbjct: 96 ccatgcaaatt 86
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 279,703
Number of extensions: 5271
Number of successful extensions: 5271
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5270
Number of HSP's successfully gapped: 3
Length of query: 3004
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2986
Effective length of database: 8,109,745
Effective search space: 24215698570
Effective search space used: 24215698570
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)