BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13593 (UTR included)
(1387 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_335_C2 113 8e-25
BF01055B2A04 98 5e-20
BF01031B2E06 84 7e-16
>BF14_335_C2
Length = 1827
Score = 113 bits (57), Expect = 8e-25
Identities = 96/109 (88%)
Strand = Plus / Minus
Query: 466 acatacttatgtattagggaattttaaagcgcgttatgataatagagcttacggttcctt 525
||||| || |||||| | ||||||||||||||| || | ||||||||| |||||||||||
Sbjct: 1277 acatatttctgtattcgcgaattttaaagcgcgctacgctaatagagcctacggttcctt 1218
Query: 526 gggaaaccaacatccccaaagaccatgccaccaaggtcaataagtatta 574
|| | ||||||||||||||| ||||||||| ||||||||| ||||||||
Sbjct: 1217 ggaagaccaacatccccaaaaaccatgccatcaaggtcaacaagtatta 1169
>BF01055B2A04
Length = 830
Score = 97.6 bits (49), Expect = 5e-20
Identities = 87/99 (87%), Gaps = 3/99 (3%)
Strand = Plus / Minus
Query: 505 taatagagcttacggttccttgggaaaccaacatccccaaagaccatgccaccaaggtca 564
|||||||||||||| |||| ||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 543 taatagagcttacgattccctggaaaaccaacatccccaaagaccgtgccaccgaggtca 484
Query: 565 ataagtattacgatatcactaacgaacccactaggaata 603
||||| ||| | |||||||||||| |||||||||||
Sbjct: 483 ataag---tacaagctcactaacgaactcactaggaata 448
>BF01031B2E06
Length = 707
Score = 83.8 bits (42), Expect = 7e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 528 gaaaccaacatccccaaagaccatgccaccaaggtcaataagtattacga 577
|||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacga 485
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 219,229
Number of extensions: 9141
Number of successful extensions: 9141
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 9141
Number of HSP's successfully gapped: 3
Length of query: 1387
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1370
Effective length of database: 8,119,229
Effective search space: 11123343730
Effective search space used: 11123343730
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)