BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13609 (UTR included)
(1210 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01002X1A11 325 9e-89
BF01019A1H08 84 6e-16
BF01044B1A07 78 4e-14
BF14_335_C2 68 4e-11
>BF01002X1A11
Length = 723
Score = 325 bits (164), Expect = 9e-89
Identities = 167/168 (99%)
Strand = Plus / Plus
Query: 400 aggcccgtagttacctcgagtctttgccatataagcctcgtgtgccgtggacggagttgt 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aggcccgtagttacctcgagtctttgccatataagcctcgtgtgccgtggacggagttgt 615
Query: 460 tcccgggggctgaccctcgagccctggatctactgcatcgtatgctcaccttcaacccac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcccgggggctgaccctcgagccctggatctactgcatcgtatgctcaccttcaacccac 675
Query: 520 acaagcgcatcacagtcgaggaggcactggcacacccctacctcgagc 567
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 acaagcgtatcacagtcgaggaggcactggcacacccctacctcgagc 723
>BF01019A1H08
Length = 504
Score = 83.8 bits (42), Expect = 6e-16
Identities = 57/62 (91%)
Strand = Plus / Minus
Query: 247 aagctcctctccctgccactcgatggacccagcacccgcacggtgaatccgtggaatgct 306
|||||||||||||||| || |||||||||| ||||||||||||||||||| | |||||||
Sbjct: 438 aagctcctctccctgcaacgcgatggacccggcacccgcacggtgaatccattgaatgct 379
Query: 307 aa 308
||
Sbjct: 378 aa 377
>BF01044B1A07
Length = 806
Score = 77.8 bits (39), Expect = 4e-14
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 247 aagctcctctccctgccactcgatggacccagcacccgcacggtgaatccgtggaatgct 306
||||||||||||||||||| |||||||||| |||||||||||||||||| | ||| |||
Sbjct: 501 aagctcctctccctgccacgcgatggacccgccacccgcacggtgaatccattgaacgct 442
Query: 307 aaaaagtttcg 317
| ||||||||
Sbjct: 441 gagaagtttcg 431
>BF14_335_C2
Length = 1827
Score = 67.9 bits (34), Expect = 4e-11
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 247 aagctcctctccctgccactcgatggacccagcacccgcacggtgaatccgtggaatgct 306
|||||||||||||||| || || |||||| ||||||||||||||||||| | ||| |||
Sbjct: 882 aagctcctctccctgcaacgcggcggacccggcacccgcacggtgaatccatagaaagct 823
Query: 307 aaaaagtttcgtct 320
|| | |||||||||
Sbjct: 822 aagaggtttcgtct 809
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 186,145
Number of extensions: 18758
Number of successful extensions: 18758
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 18758
Number of HSP's successfully gapped: 4
Length of query: 1210
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1193
Effective length of database: 8,119,229
Effective search space: 9686240197
Effective search space used: 9686240197
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)