BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13629 (UTR included)
(2236 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01051B1E10 569 e-162
>BF01051B1E10
Length = 467
Score = 569 bits (287), Expect = e-162
Identities = 306/311 (98%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 1820 gataaatattccgctagacgcatacgagtctatggaggcgtcctacatcaacaactagag 1879
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 342 gataaatattccgctagacgcatacgagtttatggaggcgtcctacatcaacaactagag 283
Query: 1880 actaagtctatattgtagtctagtattttactgcatttgatactaagttttaacaagtat 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 actaagtctatattgtagtctagtattttactgcatttgatactaagttttaacaagtat 223
Query: 1940 atttttacacttttgttcgatgtacaatgaacggattgttacagcgctatacatacagta 1999
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 atttttacacttttgttcgatgtacaatgaacggattgttacagcgctatacatacagta 163
Query: 2000 tataatttcaaagttgctcggctgtgccttaatgaaagcggtatgttcgatgccatttta 2059
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 162 tataatttcaaagttgctcggctgtgccttaatgaaagcggtatgttcgatgccattata 103
Query: 2060 tcgatgttgtaatacacttattttatcatatttttttttattcgtggaaataaaagtcga 2119
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 102 tcgatgttgtaatacacttattttatcatatttt-ttttattcggggaaataaaagtcga 44
Query: 2120 catatttttga 2130
||| |||||||
Sbjct: 43 catttttttga 33
Score = 194 bits (98), Expect = 4e-49
Identities = 119/126 (94%)
Strand = Plus / Minus
Query: 1596 tccccggaacaggcggcggcggcggcggctcgctggctcccgggactcttctgtcccgag 1655
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 467 tccccggaacaggcggcggcggcggcggctcgctggctcccgggatttttttgtcccgag 408
Query: 1656 aacgtcgccctggccctcgtctgccaccccgccaaggtagccgacatgcaggccgccttc 1715
|| || ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 407 aaagttgccctggcccttgtttgccaccccgccaaggtagccgacatgcaggccgccttc 348
Query: 1716 caaaag 1721
||||||
Sbjct: 347 caaaag 342
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 240,246
Number of extensions: 4986
Number of successful extensions: 4986
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 4981
Number of HSP's successfully gapped: 2
Length of query: 2236
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2219
Effective length of database: 8,119,229
Effective search space: 18016569151
Effective search space used: 18016569151
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)