BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13748 (UTR included)
(1136 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2H03 137 4e-32
BF01060B1D11 88 4e-17
BF14_335_C2 78 3e-14
>BF01047B2H03
Length = 758
Score = 137 bits (69), Expect = 4e-32
Identities = 241/296 (81%), Gaps = 3/296 (1%)
Strand = Plus / Minus
Query: 574 aggcagttgaaactgctaagcatttactggtgagatgtagggtactcctggataacagtc 633
||||||||| || |||| ||||||| ||| || |||||||| |||||||||||| | |||
Sbjct: 345 aggcagttggaattgctgagcatttgctgatgggatgtaggctactcctggatagcggtc 286
Query: 634 aatactcgcg-tcgtcacgatagggttctggaaatcatatttgaagcggttaatctttcg 692
|||||| || || || ||||||||| | | ||||| ||||||||||| | ||| |
Sbjct: 285 aatactaccggtctccatgatagggttttaaatttcatacatgaagcggttagtattttg 226
Query: 693 gtagccagagcgcaaagcgaaataacaacaaacgagcgatcaataggttttgtgggagaa 752
|||| || ||| ||| |||||||| ||||||| ||||| ||| ||||||||| |||||
Sbjct: 225 gtagtcattgcggaaaaagaaataaccacaaacgggcgattaattggttttgtgagagaa 166
Query: 753 ggcactagggctatgaaatcaaacgtcaagccttactctccatccttaaagcggcttcgg 812
| || ||||||||| || |||||| |||||||||||||| ||||||||||||| |||||
Sbjct: 165 gacattagggctataaagtcaaacatcaagccttactct--atccttaaagcggtttcgg 108
Query: 813 attggattgtaattatggatacgtataagaaacaatacataatcccagaggatatt 868
|||| | | |||| |||||||||||| | ||| ||||| |||||| ||| |||||
Sbjct: 107 attgcactataatcatggatacgtatggggaacgatacaaaatccccgagcatatt 52
Score = 77.8 bits (39), Expect = 3e-14
Identities = 84/97 (86%), Gaps = 4/97 (4%)
Strand = Plus / Minus
Query: 356 tataagatccatccaatgagtttagagatgcagaacgagtggttacacat-gggagattt 414
||||| |||||| ||||||||||||| |||||||||||||||||| |||| | ||||
Sbjct: 501 tataacatccatgcaatgagtttagatatgcagaacgagtggttagacatagagaga--- 445
Query: 415 tttcatcccattagcactaaaatggcgcactttaatt 451
|| ||| ||||||||| ||||||||||||| ||||||
Sbjct: 444 ttccattccattagcaataaaatggcgcaccttaatt 408
>BF01060B1D11
Length = 799
Score = 87.7 bits (44), Expect = 4e-17
Identities = 86/98 (87%), Gaps = 4/98 (4%)
Strand = Plus / Minus
Query: 356 tataagatccatccaatgagtttagagatgcagaacgagtggttacacat-gggagattt 414
|||||||||||| ||||| |||||||||||||||||||||||||| |||| | ||||
Sbjct: 329 tataagatccatgcaatgcgtttagagatgcagaacgagtggttagacatagagaga--- 273
Query: 415 tttcatcccattagcactaaaatggcgcactttaattt 452
|| ||| ||||||||| ||||||||||||| |||||||
Sbjct: 272 ttccattccattagcaataaaatggcgcaccttaattt 235
>BF14_335_C2
Length = 1827
Score = 77.8 bits (39), Expect = 3e-14
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 1082 ttcattcttggaacgtacttcgaaggcagccctagtaggttcctttcaaatttgg 1136
||||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||
Sbjct: 1038 ttcattcttcgaacgtacttcgaagacagctctagtaggttcgtttcaaatttgg 984
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 142,452
Number of extensions: 2778
Number of successful extensions: 2778
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2777
Number of HSP's successfully gapped: 4
Length of query: 1136
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1119
Effective length of database: 8,119,229
Effective search space: 9085417251
Effective search space used: 9085417251
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)