BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13848 (UTR included)
(4792 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01019A1H08 121 1e-26
BF14_335_C4 105 6e-22
BF01049B1F01 101 1e-20
BF14_335_C2 92 1e-17
BF01016B1E06 76 6e-13
BF01016A2B02 76 6e-13
>BF01019A1H08
Length = 504
Score = 121 bits (61), Expect = 1e-26
Identities = 79/85 (92%)
Strand = Plus / Minus
Query: 2156 ccccttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgca 2215
||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct: 481 ccccttaaacctacacctgggtcgcaactcccaggcactgttgaagctcctctccctgca 422
Query: 2216 acgcgatggattcggcatccgcacg 2240
|||||||||| ||||| |||||||
Sbjct: 421 acgcgatggacccggcacccgcacg 397
>BF14_335_C4
Length = 1491
Score = 105 bits (53), Expect = 6e-22
Identities = 66/69 (95%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 2156 ccccttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgca 2215
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct: 1248 ccccttaaacctacacctgggtcgcaagtcccaggcactgttgaagctcctct-cctgca 1306
Query: 2216 acgcgatgg 2224
|||||||||
Sbjct: 1307 acgcgatgg 1315
>BF01049B1F01
Length = 840
Score = 101 bits (51), Expect = 1e-20
Identities = 60/63 (95%)
Strand = Plus / Minus
Query: 2156 ccccttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgca 2215
||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 649 ccccttacacctacacctgggtcgcaagtcccaggcactgttgaagctcctctccctgca 590
Query: 2216 acg 2218
|||
Sbjct: 589 acg 587
>BF14_335_C2
Length = 1827
Score = 91.7 bits (46), Expect = 1e-17
Identities = 58/62 (93%)
Strand = Plus / Minus
Query: 2159 cttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgcaacg 2218
|||||||||||||||| ||||||| || |||||||| |||||||||||||||||||||||
Sbjct: 922 cttaaacctacacctgtgtcgcaaatcccaggcactgttgaagctcctctccctgcaacg 863
Query: 2219 cg 2220
||
Sbjct: 862 cg 861
>BF01016B1E06
Length = 606
Score = 75.8 bits (38), Expect = 6e-13
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 2156 ccccttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgca 2215
||||||||||||||||||||||||| | || | |||||| |||||||||||||| |||||
Sbjct: 254 ccccttaaacctacacctgggtcgctactccccggcactgttgaagctcctctctctgca 195
Query: 2216 ac 2217
||
Sbjct: 194 ac 193
>BF01016A2B02
Length = 780
Score = 75.8 bits (38), Expect = 6e-13
Identities = 56/62 (90%)
Strand = Plus / Minus
Query: 2159 cttaaacctacacctgggtcgcaagtctcaggcactattgaagctcctctccctgcaacg 2218
||||| |||||||||| ||||||| || |||||||| ||||||||||||||||| |||||
Sbjct: 283 cttaagcctacacctgagtcgcaattcccaggcactgttgaagctcctctcccttcaacg 224
Query: 2219 cg 2220
||
Sbjct: 223 cg 222
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 514,904
Number of extensions: 10918
Number of successful extensions: 10918
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 10917
Number of HSP's successfully gapped: 7
Length of query: 4792
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4774
Effective length of database: 8,109,745
Effective search space: 38715922630
Effective search space used: 38715922630
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)