BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13891 (UTR included)
(2296 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01042B1F03 1536 0.0
>BF01042B1F03
Length = 792
Score = 1536 bits (775), Expect = 0.0
Identities = 787/792 (99%)
Strand = Plus / Plus
Query: 392 atgatcactgtggtcttgcaataattgttatcagttttacatttttttttatttaagtgg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgatcactgtggtcttgcaataattgttatcagttttacatttttttttatttaagtgg 60
Query: 452 tgcagtgtataaataaatatttgttcctgctaagtataaagttctaaaaatgtttagctg 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgcagtgtataaataaatatttgttcctgctaagtataaagttctaaaaatgtttagctg 120
Query: 512 gcttaaaaaagaaggtgaaaaaactgagagcatcgaaaatgtcgtcgagggtctcaaaag 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gcttaaaaaagaaggtgaaaaaactgagagcatcgaaaatgtcgtcgagggtctcaaaag 180
Query: 572 aatatacaaaacgaaacttttgccgctggaatcacattaccagtttcatgatttccattc 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatatacaaaacgaaacttttgccgctggaatcacattaccagtttcatgatttccattc 240
Query: 632 cccacaacttgaagaccctgactttgatgcaaaacccatgatactcctggtcggacaata 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cccacaacttgaagaccctgactttgatgcaaaacccatgatactcctggtcggacaata 300
Query: 692 ctctaccggcaaaacgacctttatcaaatatctcttagagagagattttcctggaatacg 751
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ctctaccggcaaaacgacctttatcaaatatctcttagagagagattttcctggaatacg 360
Query: 752 tatcggaccggagcccacaacagatagatttattgctgttatgtttgatgagaaagaagg 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tatcggaccggagcccacaacagatagatttattgctgttatgtttgatgagaaagaagg 420
Query: 812 aatgattcccgggaatgcactcgttgtggatcccaagaaacaatttcgacctctcagtaa 871
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatgattccggggaatgcactcgttgtggatcccaagaaacaatttcgacctctcagtaa 480
Query: 872 atttggaaacgccttcttaaacagattccaatgttcaacggtaaactcccctgtattgag 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atttggaaacgccttcttaaacagattccaatgttcaacggtaaactcccctgtattgag 540
Query: 932 aggtatttcaatcgtcgacacacccggtattctatcgggggagaaacagcgtgtcgacag 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggtatttcaatcgtcgacacacccggtattctatcgggggagaaacagcgtgtcgacag 600
Query: 992 aggttacgacttcacgggtgttctggaatggttcgcggagcgtgtcgaccgtatcgtact 1051
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aggttacgacttcacgggtgtcctggaatggttcgcggagcgtgtcgaccgtatcgtact 660
Query: 1052 ccttttcgacgcccacaaactcgatatttcagacgaattcagacggagtatcgaagctct 1111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccttttcgacgcccacaaactcgatatttcagacgaattcagacggagtatcgaagctct 720
Query: 1112 gaggggacacgatgataaaatacggattgttcttaacaaggcagacatgatcgatcatca 1171
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gnnnggacacgatgataaaatacggattgttcttaacaaggcagacatgatcgatcatca 780
Query: 1172 acagctcatgcg 1183
||||||||||||
Sbjct: 781 acagctcatgcg 792
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 287,422
Number of extensions: 5886
Number of successful extensions: 5886
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5886
Number of HSP's successfully gapped: 1
Length of query: 2296
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2279
Effective length of database: 8,119,229
Effective search space: 18503722891
Effective search space used: 18503722891
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)