BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13909 (UTR included)
(1306 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01031B2E06 100 1e-20
BF14_335_C2 82 3e-15
BF01055B2A04 74 6e-13
>BF01031B2E06
Length = 707
Score = 99.6 bits (50), Expect = 1e-20
Identities = 119/144 (82%), Gaps = 11/144 (7%)
Strand = Plus / Plus
Query: 648 gaaaccaacatccccaaagaccatgccatcaaggtcaacaagtattacgagttctctaac 707
||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 436 gaaaccaacatccccaaagaccatgccatcaagatcaataagtattacga---------- 485
Query: 708 gaactcactaagaataggttcgttgtaaatttgtacgtggtagaagtagtagcgagaagt 767
| |||||||||||||||||||| | ||||||||||| ||||||||| | |||||| |
Sbjct: 486 -agctcactaagaataggttcgtggcaaatttgtacgcggtagaagtgggagcgagcgtt 544
Query: 768 ataacagctaaatctctctacaac 791
||| ||||||||||||| |||||
Sbjct: 545 gtaaaagctaaatctctccacaac 568
>BF14_335_C2
Length = 1827
Score = 81.8 bits (41), Expect = 3e-15
Identities = 53/57 (92%)
Strand = Plus / Minus
Query: 638 ggttcctttggaaaccaacatccccaaagaccatgccatcaaggtcaacaagtatta 694
|||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1225 ggttccttggaagaccaacatccccaaaaaccatgccatcaaggtcaacaagtatta 1169
>BF01055B2A04
Length = 830
Score = 73.8 bits (37), Expect = 6e-13
Identities = 81/95 (85%), Gaps = 3/95 (3%)
Strand = Plus / Minus
Query: 649 aaaccaacatccccaaagaccatgccatcaaggtcaacaagtattacgagttctctaacg 708
||||||||||||||||||||| ||||| | ||||||| ||| ||| || || ||||||
Sbjct: 519 aaaccaacatccccaaagaccgtgccaccgaggtcaataag---tacaagctcactaacg 463
Query: 709 aactcactaagaataggttcgttgtaaatttgtac 743
||||||||| |||||| ||||| ||||| ||||||
Sbjct: 462 aactcactaggaatagattcgtcgtaaacttgtac 428
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 310,806
Number of extensions: 21499
Number of successful extensions: 21499
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 21498
Number of HSP's successfully gapped: 4
Length of query: 1306
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1289
Effective length of database: 8,119,229
Effective search space: 10465686181
Effective search space used: 10465686181
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)