BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN13972 (UTR included)
(1162 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_729_C3 163 8e-40
BF01049A2D11 123 7e-28
BF01012A1B09 82 2e-15
BF01049B2H03 72 2e-12
BF01035X1C09 72 2e-12
BF01005B1E12 72 2e-12
BF01025A1D01 72 2e-12
BF01024A1H07 72 2e-12
BF01033B1B03 70 9e-12
BF14_729_C2 70 9e-12
>BF14_729_C3
Length = 2041
Score = 163 bits (82), Expect = 8e-40
Identities = 106/114 (92%)
Strand = Plus / Plus
Query: 438 aaggaacacatctcagacatcaataatagacgcgcgtcgaagtcggcagtgtgtaaacac 497
||||||||||||||||||||||| || || |||||||||||||| ||||||||| |||||
Sbjct: 1209 aaggaacacatctcagacatcaaaaacaggcgcgcgtcgaagtcagcagtgtgtgaacac 1268
Query: 498 acaatggacaaaccaggccactacattcggtttgataaaccacaagtcctcgct 551
||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct: 1269 acaatggacaaaccaggccactacattcgttttgataaacctcaaatcctcgct 1322
Score = 143 bits (72), Expect = 7e-34
Identities = 198/240 (82%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 172 gatatactacgcattttttactattttaaaactacatagtcccgacgtttgggttccttt 231
|||||||||||| ||||| ||||| ||||||||||| ||||||||||| |||| ||||
Sbjct: 1676 gatatactacgcggattttattatttaaaaactacataatcccgacgtttcggttacttt 1617
Query: 232 gtagcatccgtgatcacgggtagacgggatgaaaatgtctgtcagtt-gttcttattatt 290
| |||| ||||||||||||| ||||| | || |||||||||||||| || ||| |||||
Sbjct: 1616 gcagcaaccgtgatcacgggcagacgaggtgtgaatgtctgtcagttggtccttgttatt 1557
Query: 291 tgtcatctaccgtcagagatttcttaatttcctggcgtaccgctcttaatgcctgcagaa 350
| |||||||||| || ||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 1556 tatcatctaccgccatcgatttcttaatnnnntggcgtaccgctctggatgccggcagaa 1497
Query: 351 tgcgcttgctgcgtgcccaggtcctgcgatggggtgaaggacatgggattttatattttt 410
|||||| | | || |||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1496 tgcgctcacggtgtcttgaggtcctgcggtgtggtttcggacatgggattttatattttt 1437
Score = 75.8 bits (38), Expect = 1e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 1121 ctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1589 ctcgtctgcccgtgatcacggttgctgcaaagtaaccgaaac 1630
>BF01049A2D11
Length = 776
Score = 123 bits (62), Expect = 7e-28
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 474 tcgaagtcggcagtgtgtaaacacacaatggacaaaccaggccactacattcggtttgat 533
|||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 tcgaagtcagcagtatgtgaacacacaatggacaaaccaggccactacattcggtttgat 755
Query: 534 aaaccacaagtcctcgct 551
||||||||| ||||||||
Sbjct: 756 aaaccacaaatcctcgct 773
>BF01012A1B09
Length = 841
Score = 81.8 bits (41), Expect = 2e-15
Identities = 90/105 (85%), Gaps = 1/105 (0%)
Strand = Plus / Plus
Query: 148 atttaaataaaactaagat-tttcagatatactacgcattttttactattttaaaactac 206
|||||||| ||||||| || |||| |||| ||||||| ||||| ||||||||||||||
Sbjct: 736 atttaaatgaaactaatatatttcggatacactacgcggattttattattttaaaactac 795
Query: 207 atagtcccgacgtttgggttcctttgtagcatccgtgatcacggg 251
||| ||||||||||| |||| |||| |||| |||||||||||||
Sbjct: 796 ataatcccgacgtttcggttacttttcagcagccgtgatcacggg 840
>BF01049B2H03
Length = 832
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1048 taaatgaaactaatatttttcggattaatacgcgtattttatta 1091
||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 321 taaatgaaactaatatttttcggattactaagcgtattttatta 278
>BF01035X1C09
Length = 778
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1119 atctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 665 atctcgtcttcccgtgatcacggttgctgcaaagtaaccgaaac 622
>BF01005B1E12
Length = 657
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1119 atctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
|||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 302 atctcgtctggccgtgatcacggttgctgcaaagtaaccgaaac 345
>BF01025A1D01
Length = 764
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 1119 atctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 485 atctcgtctgcccgtgatcacggttgctgaaaagtaaccgaaac 442
>BF01024A1H07
Length = 726
Score = 71.9 bits (36), Expect = 2e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 1119 atctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 646 atctcgtctgcccgtgatcacggttgctgaaaagtaaccgaaac 689
>BF01033B1B03
Length = 826
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Minus
Query: 1119 atctcgtctgcccttgatcacggttgctgcaaagtaaccgaaa 1161
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 228 atctcgtctgcctatgatcacggttgctgcaaagtaaccgaaa 186
>BF14_729_C2
Length = 1289
Score = 69.9 bits (35), Expect = 9e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 1120 tctcgtctgcccttgatcacggttgctgcaaagtaaccgaaac 1162
|||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 528 tctcgtctgcccgtgatcacggttgctgaaaagtaaccgaaac 570
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 174,389
Number of extensions: 4602
Number of successful extensions: 4602
Number of sequences better than 1.0e-10: 10
Number of HSP's gapped: 4601
Number of HSP's successfully gapped: 12
Length of query: 1162
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1145
Effective length of database: 8,119,229
Effective search space: 9296517205
Effective search space used: 9296517205
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)