BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14100 (UTR included)
(2077 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_1961_C1 1059 0.0
>BF14_1961_C1
Length = 939
Score = 1059 bits (534), Expect = 0.0
Identities = 546/550 (99%)
Strand = Plus / Plus
Query: 429 tgctttatgagtaatattacttaaaataaagatattaagttataaaaacatattaagtga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgctttatgagtaatattacttaaaataaagatattaagttataaaaacatattaagtga 61
Query: 489 tagtatataataatggatgatcagggaagaaaagttatcgtttgtgacaatggcacaggt 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tagtatataataatggatgatcagggaagaaaagttatcgtttgtgacaatggcacaggt 121
Query: 549 ttcgtaaaatgcggatacgccggcagtaacttccctgcgttcatttttccgtcaatggtc 608
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 122 ttcgtaaaatgcggatacgccggcagcaacttccctgcgttcattttcccgtcaatggtc 181
Query: 609 ggccggccgattattagagcggaaaataaaatcggagacattgatgttaaggatttgatg 668
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 182 ggccggccgattattagagcggaaaataaaatcggagacattgatgtgaaggatttgatg 241
Query: 669 gtcggagatgaagcgtctcaactccgttccatgctcgaagtcagttatcccatggaaaat 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtcggagatgaagcgtctcaactccgttccatgctcgaagtcagttatcccatggaaaat 301
Query: 729 ggcgtggttagaaactgggaggatatgtgtcacgtctgggattacacatttggtcccagc 788
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 302 ggcgtggttagaaactgggaggatatgtgtcacgtctgggactacacatttggtcccagc 361
Query: 789 aagatgaatattgaccccaaggacaccaaaatactgctcaccgagccaccgatgaacccc 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aagatgaatattgaccccaaggacaccaaaatactgctcaccgagccaccgatgaacccc 421
Query: 849 actaaaaatagagagaaaatgattgaggttatgtttgagaagtacggtttcgacagcgcc 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 actaaaaatagagagaaaatgattgaggttatgtttgagaagtacggtttcgacagcgcc 481
Query: 909 tacatagccatacaagcggtgctcacgctgtacgcccagggactgatatcgggagtggtg 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tacatagccatacaagcggtgctcacgctgtacgcccagggactgatatcgggagtggtg 541
Query: 969 gtggactcag 978
||||||||||
Sbjct: 542 gtggactcag 551
Score = 244 bits (123), Expect = 5e-64
Identities = 126/127 (99%)
Strand = Plus / Plus
Query: 976 cagacgggagggtcatcaaagtggggggagaacggtttgaagcacccgaggccctgttcc 1035
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cagacgggagagtcatcaaagtggggggagaacggtttgaagcacccgaggccctgttcc 872
Query: 1036 agccgcacctcatcaatgtcgagggtcaagggatcgctgaacttgtcttcaacactatac 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 agccgcacctcatcaatgtcgagggtcaagggatcgctgaacttgtcttcaacactatac 932
Query: 1096 aggcggc 1102
|||||||
Sbjct: 933 aggcggc 939
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 286,982
Number of extensions: 6954
Number of successful extensions: 6954
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 6954
Number of HSP's successfully gapped: 2
Length of query: 2077
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2060
Effective length of database: 8,119,229
Effective search space: 16725611740
Effective search space used: 16725611740
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)