BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14362 (UTR included)
(2353 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01052B1H02 276 2e-73
BF14_619_C1 135 4e-31
BF01029A1A09 105 3e-22
BF01055B2F03 80 2e-14
>BF01052B1H02
Length = 790
Score = 276 bits (139), Expect = 2e-73
Identities = 139/139 (100%)
Strand = Plus / Minus
Query: 1757 gatttacggcaactggttgttcaacattgtgtgcacggtcattttaccgacttggatatt 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gatttacggcaactggttgttcaacattgtgtgcacggtcattttaccgacttggatatt 80
Query: 1817 gtcgtggcagattttgtggaacagagtccaagtctaatataagcttatttatgtactttc 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 gtcgtggcagattttgtggaacagagtccaagtctaatataagcttatttatgtactttc 20
Query: 1877 caaataataaagtattata 1895
|||||||||||||||||||
Sbjct: 19 caaataataaagtattata 1
>BF14_619_C1
Length = 793
Score = 135 bits (68), Expect = 4e-31
Identities = 83/88 (94%)
Strand = Plus / Minus
Query: 41 attaaaataagtagatgattcaggcggatcccttgaccacaattatgagttgtgaacagg 100
||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 379 attaaaataggtatgtgattcaggcggatccgttgaccacaattatgagttgtgaacagg 320
Query: 101 acggctgccgaaccaccactggctcatc 128
|||||||||||||||| |||||||||||
Sbjct: 319 acggctgccgaaccacgactggctcatc 292
>BF01029A1A09
Length = 732
Score = 105 bits (53), Expect = 3e-22
Identities = 98/113 (86%), Gaps = 5/113 (4%)
Strand = Plus / Minus
Query: 370 attataaagggtgccaaccagaggttccagggaagctacgaaacttacttatatgtatat 429
|||||| | |||| ||||| ||||||||||| || ||||||||| |||||||||||||||
Sbjct: 113 attatataaggtggcaaccggaggttccaggaaaactacgaaacatacttatatgtatat 54
Query: 430 aataagaa-----ttacatattaaaacttataacctatacctaagacttcatg 477
|||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct: 53 tataataaaaaaattacatattaaaacttataacctatacctaagactacatg 1
>BF01055B2F03
Length = 776
Score = 79.8 bits (40), Expect = 2e-14
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 476 tgattgccccgatgttaggatagcaatgtcattccatagcttgtgtggcatcaggaatct 535
|||||||||||| || || ||||| ||| ||||||||||| ||||||| |||||| |||
Sbjct: 569 tgattgccccgacgtaagcatagccatgccattccatagcgtgtgtggtgtcaggagtct 628
Query: 536 tctggttcacacggcttggtgttcgttccgcggagt 571
||||||||| |||| |||||| ||||||||||||
Sbjct: 629 cctggttcacgcggcgcggtgttggttccgcggagt 664
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 296,307
Number of extensions: 8111
Number of successful extensions: 8111
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 8110
Number of HSP's successfully gapped: 4
Length of query: 2353
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2336
Effective length of database: 8,119,229
Effective search space: 18966518944
Effective search space used: 18966518944
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)