BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14819 (UTR included)
(2464 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01059A1G10 176 1e-43
BF01037B1H08 113 1e-24
BF01056B1D02 68 7e-11
>BF01059A1G10
Length = 505
Score = 176 bits (89), Expect = 1e-43
Identities = 260/317 (82%)
Strand = Plus / Plus
Query: 1446 gtcactttgagtgggaactacgaggttcaaggaaaagtgctgatactaccagtggaagga 1505
||||| |||||||| || ||||||||||||||| |||||||||||||||||||||| ||
Sbjct: 1 gtcacattgagtggaaattacgaggttcaaggacaagtgctgatactaccagtggagggc 60
Query: 1506 aatgggaaatataatatagacatacgtggcatctctgtgaaatgtaatttcaatttgact 1565
|| ||||||||||| ||||| |||||||| ||| | || ||| | ||||||||| ||
Sbjct: 61 aaagggaaatataaaatagatatacgtggtatcacagtcaaaactcccttcaatttgtct 120
Query: 1566 gaattcgaagagtccggagtctcgcactggaaaataagcgacgattggtctgacagttac 1625
| | ||| | ||||| ||| ||||||||||| | | | |||||||||| | | |
Sbjct: 121 catattgaaaaatccggcacctctcactggaaaattaacaataattggtctgagatcttc 180
Query: 1626 aaattcaaagtgcgggacggagccaccttccacttcgaaaacctatttaacggcaacaaa 1685
||||||||||||| ||||| | ||||||||||| |||||||| |||||||||||||||
Sbjct: 181 aaattcaaagtgcacaacggaactaccttccactttgaaaacctttttaacggcaacaaa 240
Query: 1686 atacttgctgatccagtcttagaattgataaactcaaattggaaggacattatggaagaa 1745
| || ||||| || ||||| ||| |||| ||| |||||||||||| |||| ||||||||
Sbjct: 241 gttctcgctgaaccggtcttggaaatgatgaacacaaattggaaggtcattgtggaagaa 300
Query: 1746 atcgcgcctccaataat 1762
||| |||||||||||||
Sbjct: 301 atctcgcctccaataat 317
>BF01037B1H08
Length = 758
Score = 113 bits (57), Expect = 1e-24
Identities = 81/89 (91%)
Strand = Plus / Plus
Query: 1186 gtggcctggaggttaaaagcccgtctctaatacgtgagagcgcgggtccgatacctggca 1245
||||||||||||||||| ||||| |||| |||||||| |||||||| ||| ||||||||
Sbjct: 77 gtggcctggaggttaaaggcccgcctctcatacgtgaaggcgcgggttcgaaacctggca 136
Query: 1246 agtaccaatatgatcttttccgagtcata 1274
||||||||| |||||||||||||||||||
Sbjct: 137 agtaccaatgtgatcttttccgagtcata 165
>BF01056B1D02
Length = 778
Score = 67.9 bits (34), Expect = 7e-11
Identities = 53/58 (91%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 1217 acgtgagagcgcgggtccgatacctggcaagtaccaatatgatcttttccgagtcata 1274
||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||
Sbjct: 493 acgtgagggcgcgggtt-gaaacctggcaagtaccaatgtgatcttttccgagtcata 549
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 235,006
Number of extensions: 3840
Number of successful extensions: 3840
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3840
Number of HSP's successfully gapped: 4
Length of query: 2464
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2447
Effective length of database: 8,119,229
Effective search space: 19867753363
Effective search space used: 19867753363
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)