BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14873 (UTR included)
(1801 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01023A2A12 88 6e-17
BF01056B1D02 84 9e-16
BF01037B1H08 80 1e-14
BF01044A1D01 74 9e-13
BF14_3046_C1 72 3e-12
BF01024A2B03 70 1e-11
>BF01023A2A12
Length = 723
Score = 87.7 bits (44), Expect = 6e-17
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 506 ccttctccatgtgagaagaggccttcgctcagcagtgggcttcgataggctgatgatgat 565
|||||||||||||| |||||||||| ||||||||||| ||| ||||||||||||||||||
Sbjct: 283 ccttctccatgtgataagaggcctttgctcagcagtgagctccgataggctgatgatgat 342
>BF01056B1D02
Length = 778
Score = 83.8 bits (42), Expect = 9e-16
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 513 catgtgagaagaggccttcgctcagcagtgggcttcgataggctgatgat 562
|||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 688 catgtgagaagaggcctttgctcagcagtgggctccgataggctgatgat 737
>BF01037B1H08
Length = 758
Score = 79.8 bits (40), Expect = 1e-14
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 506 ccttctccatgtgagaagaggccttcgctcagcagtgggcttcgataggctgatgatgat 565
|||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||| ||||
Sbjct: 287 ccttctacatgtgagaagaggcctttgctcagctgtgggctccgataggctgatggtgat 346
>BF01044A1D01
Length = 742
Score = 73.8 bits (37), Expect = 9e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 1670 tttttttaatgctgtggcttcattcgcactggaatcgtggaagactttgccaatgtcaag 1729
||||||| ||||| |||||||||| ||||||||||||||||| | | ||||||||||||
Sbjct: 178 ttttttttatgctatggcttcatttgcactggaatcgtggaatattctgccaatgtcaac 237
Query: 1730 gttattatt 1738
||| |||||
Sbjct: 238 gtttttatt 246
>BF14_3046_C1
Length = 1016
Score = 71.9 bits (36), Expect = 3e-12
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 1678 atgctgtggcttcattcgcactggaatcgtggaagactttgccaatgtcaaggttattat 1737
||||| ||||||| |||||||||||||||||||| | |||||||||||||| ||| ||||
Sbjct: 1016 atgctatggcttc-ttcgcactggaatcgtggaatattttgccaatgtcaacgtttttat 958
Query: 1738 ttgt 1741
||||
Sbjct: 957 ttgt 954
>BF01024A2B03
Length = 724
Score = 69.9 bits (35), Expect = 1e-11
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 1668 tttttttttaatgctgtggcttcattcgcactggaatcgtggaagactttgccaatgtca 1727
||||||||||||||| | ||||| || |||||||||||| ||| | |||||||||||||
Sbjct: 336 tttttttttaatgctatcgcttcgctctcactggaatcgttgaatattttgccaatgtca 277
Query: 1728 aggttattatttgta 1742
| ||| |||||||||
Sbjct: 276 acgtttttatttgta 262
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 284,672
Number of extensions: 13011
Number of successful extensions: 13011
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 13011
Number of HSP's successfully gapped: 6
Length of query: 1801
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 1784
Effective length of database: 8,119,229
Effective search space: 14484704536
Effective search space used: 14484704536
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)