BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14874 (UTR included)
(2422 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01042A2C05 1370 0.0
BF14_729_C2 107 8e-23
BF01032A1C05 72 5e-12
>BF01042A2C05
Length = 753
Score = 1370 bits (691), Expect = 0.0
Identities = 700/703 (99%)
Strand = Plus / Plus
Query: 433 atggtgtcttaaaatattcataatatcagtcatattatcattgttttgtggtaaaataac 492
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 48 atggtgtcttaaaatattcataatatcagtcatattgtcattgtttcgtggtaaaataac 107
Query: 493 attacaaaatgcttactccgagatttaagttatctcaagacgaaaatcatgtgtttataa 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 attacaaaatgcttactccgagatttaagttatctcaagacgaaaatcatgtgtttataa 167
Query: 553 ccgtacatgcaccctatacaaatatcggcgagtcggagatcgatattgatggcgagaatt 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 ccgtacatgcaccctatacaaatatcggcgagtcggagatcgatattgatggcgagaatt 227
Query: 613 ttctatttgtgtctagtccatacttccttagactgcgactacctggaaaaattgttgaaa 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 ttctatttgtgtctagtccatacttccttagactgcgactacctggaaaaattgttgaaa 287
Query: 673 acgatcagtccaaaggctcttatatctgtgattctggagattttaatttcactttcgaca 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 acgatcagtccaaaggctcttatatctgtgattctggagattttaatttcactttcgaca 347
Query: 733 aggaaacacctggggaacacttcgaaaacctcgatatgattaccagcttgctggctcccc 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggaaacacctggggaacacttcgaaaacctcgatatgattaccagcttgctggctcccc 407
Query: 793 gggatatacccgatgtgaatccaaatttagttgaaatgctagaagaagatggcgtcaata 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gggatatacccgatgtgaatccaaatttagttgaaatgctagaagaagatggcgtcaata 467
Query: 853 tatccgacaatgaagatgatgataaggcctgcgcggaggaggaatgcaataaatactcat 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tatccgacaatgaagatgatgataaggcctgcgcggaggaggaatgcaataaatactcat 527
Query: 913 atggatttgcaaacaaaatatcaacagacttcaaagatgtaggcgaggaatttccgcaga 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atggatttgcaaacaaaatatcaacagacttcaaagatgtaggcgaggaatttccgcaga 587
Query: 973 tattcgaacttcgcgtaccagaaagagtacctattgcagaacgcaatgaattgcgcgaaa 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 tattcgaacttcgcgtaccagaaagagtacctattgcagaacgcaatgaattgcgcgaaa 647
Query: 1033 aatacgaaaaccacaaattttcgtcggatcactatttggcagatttgtatgaagaagaac 1092
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 648 aatacgaaaaccacaaattttcgtcagatcactatttggcagatttgtatgaagaagaac 707
Query: 1093 ttcttgctccacacctagccgttgtcaccgagtggtgtgcacc 1135
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ttcttgctccacacctagccgttgtcaccgagtggtgtgcacc 750
>BF14_729_C2
Length = 1289
Score = 107 bits (54), Expect = 8e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 2361 aatacgaggataaatttcgacgatagaattgaacgaaattggaaaagtcaaagctgattt 2420
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 2 aatacgaggataaatttcgacgatagaattgaatgaaattggaaaagtcaaagccgattt 61
Query: 2421 ga 2422
||
Sbjct: 62 ga 63
>BF01032A1C05
Length = 749
Score = 71.9 bits (36), Expect = 5e-12
Identities = 66/75 (88%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 2053 gatttttatgaaatatggaaagcggaatgactgattatgtatagattggtataatggag- 2111
||||| ||| |||| |||||||||||||||||||||||||||||| | | |||||||||
Sbjct: 84 gatttctataaaatgtggaaagcggaatgactgattatgtatagaatagcataatggaga 143
Query: 2112 -gaaatgtaaatatg 2125
||| ||||||||||
Sbjct: 144 agaagtgtaaatatg 158
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 286,160
Number of extensions: 5556
Number of successful extensions: 5556
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 5556
Number of HSP's successfully gapped: 3
Length of query: 2422
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2405
Effective length of database: 8,119,229
Effective search space: 19526745745
Effective search space used: 19526745745
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)