BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14881 (UTR included)
(2992 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01052B1F12 242 3e-63
>BF01052B1F12
Length = 785
Score = 242 bits (122), Expect = 3e-63
Identities = 122/122 (100%)
Strand = Plus / Minus
Query: 1280 aggattcgcgtgggacaaagtggacatatacagcgcttcatggggccccaacgatgacgg 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 aggattcgcgtgggacaaagtggacatatacagcgcttcatggggccccaacgatgacgg 652
Query: 1340 agagaccgtggagggtccagggcgactcgccatggaggccttcaagagaggagtgcaaat 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 agagaccgtggagggtccagggcgactcgccatggaggccttcaagagaggagtgcaaat 592
Query: 1400 gg 1401
||
Sbjct: 591 gg 590
Score = 161 bits (81), Expect = 8e-39
Identities = 81/81 (100%)
Strand = Plus / Minus
Query: 1400 gggccggaacggtaaagggaatatattcgtgtgggccaacggcaatggtggaacacacga 1459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggccggaacggtaaagggaatatattcgtgtgggccaacggcaatggtggaacacacga 182
Query: 1460 cgataactgtaactgcgacgg 1480
|||||||||||||||||||||
Sbjct: 181 cgataactgtaactgcgacgg 161
Score = 99.6 bits (50), Expect = 2e-20
Identities = 50/50 (100%)
Strand = Plus / Minus
Query: 1480 gctactcttccagtatgtacacgatatctattgctagcgcttcccaacaa 1529
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gctactcttccagtatgtacacgatatctattgctagcgcttcccaacaa 1
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 375,683
Number of extensions: 24023
Number of successful extensions: 24023
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 24023
Number of HSP's successfully gapped: 3
Length of query: 2992
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2974
Effective length of database: 8,109,745
Effective search space: 24118381630
Effective search space used: 24118381630
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)