BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN14997 (UTR included)
(2119 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01047B2F12 412 e-115
>BF01047B2F12
Length = 723
Score = 412 bits (208), Expect = e-115
Identities = 217/220 (98%)
Strand = Plus / Plus
Query: 1 cctcatggagagcctttgaggttcaattaaaatgttttaattttgatgtactaaaatgat 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22 cctcatggagaacctttgaggttcaattaaaatgttttaattttgatgtactaaaatgat 81
Query: 61 ttttaatttaggtgctgtttctgtgttgtttgttatatcatatcgtagagttgaaggtct 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 ttttaatttaggtgctgttactgtgttgtttgttatatcatatcgtagagttgaaggtct 141
Query: 121 cacttaggtatccttaacttcgtttaaattactaaccaatctaacagctgtcatacctca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 142 cacttaggtatccttaacttcgtttaaattactaaccaatctaacagctatcatacctca 201
Query: 181 aatgccttcagataatgcaagccattttgcacatgaaaac 220
||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 aatgccttcagataatgcaagccattttgcacatgaaaac 241
Score = 331 bits (167), Expect = 3e-90
Identities = 201/211 (95%), Gaps = 1/211 (0%)
Strand = Plus / Plus
Query: 229 tttaaatttttcaaacaatcagttaatgtagtgtattgaattgaaaaaaaattaatttaa 288
|||| ||||||||||||| ||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 347 tttagatttttcaaacaaacagttgatgtaata-attgaattgaaaaataattaatttaa 405
Query: 289 tctaatcctaatacatggctgggtgcaagacacgtcagggatataaataaattctgttca 348
||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tctgatcataacacatggctgggtgcaagacacgtcagggatataaataaattctgttca 465
Query: 349 gtattctcgtttactaacagcatctaataattctgcttttcctatatagatagtgtcttt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gtattctcgtttactaacagcatctaataattctgcttttcctatatagatagtgtcttt 525
Query: 409 taagtggaaaataagaggtttttagtattga 439
|||||||||||||||||||||||||||||||
Sbjct: 526 taagtggaaaataagaggtttttagtattga 556
Score = 285 bits (144), Expect = 1e-76
Identities = 156/160 (97%)
Strand = Plus / Plus
Query: 721 ccataacggttggtcaatgcgtcgcttccgttgtgggcgaagcgccaggccttcgccctg 780
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 ccataacggttggtcaatgcgtcgcttccgttgtgggcgaagcgccaggcctgcgccctg 620
Query: 781 aaacgatggtcgatatgtggttcatgcagaacaaatactacagaggaaatgtcacttcat 840
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaatggttgatatgtggttcatgcagaacaaatactacagaggaaatgtcacttcat 680
Query: 841 atttgccatcggaggacggcgctaattcctatgacgattt 880
|||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaccatcggaggacggcgctaattcctatgacgattt 720
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 263,566
Number of extensions: 5322
Number of successful extensions: 5322
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5321
Number of HSP's successfully gapped: 3
Length of query: 2119
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2102
Effective length of database: 8,119,229
Effective search space: 17066619358
Effective search space used: 17066619358
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)