BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15030 (UTR included)
(2128 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01040A2B07 567 e-161
BF01026A1B03 345 2e-94
BF01047B2D03 325 2e-88
>BF01040A2B07
Length = 721
Score = 567 bits (286), Expect = e-161
Identities = 301/306 (98%)
Strand = Plus / Minus
Query: 1344 cccagcgcacctgccgtcctcatgaccttcggccccaactccctgaaatggggcacgaag 1403
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 365 cccagagcacctgccatcctcatgaccttcggccccaactccctgaaatgggccacgaag 306
Query: 1404 gtccaccctccgtcaagggtgagccccaggtatttcatggtcgggctcaccctgaccctc 1463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gtccaccctccgtcaagggtgagccccaggtatttcatggtcgggctcaccctgaccctc 246
Query: 1464 cctcctcctatgaggagggtggcacccggcgggggtcctttccgcccagtcccgcggaag 1523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 cctcctcctatgaggagggtggcacccggcgggggtcctttccgcccagtcccgcggaag 186
Query: 1524 aggagggcttcggttttgttgattctgacccgaagccccaacctctctatgcggctgatc 1583
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 185 aggagggcttcggttttgtcgattctgaaccgaagccccaacctctctatgcggctgatc 126
Query: 1584 acgaggtcagttccgacctcggccagccgcgccgcctccttgtagctccgtccccgggat 1643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acgaggtcagttccgacctcggccagccgcgccgcctccttgtagctccgtccccgggat 66
Query: 1644 aagacg 1649
||||||
Sbjct: 65 aagacg 60
>BF01026A1B03
Length = 667
Score = 345 bits (174), Expect = 2e-94
Identities = 180/182 (98%)
Strand = Plus / Minus
Query: 706 tagagaagttccgtccggacatgcgcatgttgtccctcggctcttactcgctgtgggaga 765
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 667 tagagaagttccgtccggacatgcgaatgttgtccctcggctcttactcgctgtgggaga 608
Query: 766 ctcacgggcccgaggacgaacggcgcctggagccccacgagaagccgctcctggtccaac 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctcacgggcccgaggacgaacggcgcctggagccccacgagaagccgctcctggtccaac 548
Query: 826 tcaactggcacgctgacgacagggagggacgcttcttgctcaagtgtctcaccaatagtg 885
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 547 tcaactggcacgctgacgacagggagggacgcttcctgctcaagtgtctcaccaatagtg 488
Query: 886 at 887
||
Sbjct: 487 at 486
>BF01047B2D03
Length = 842
Score = 325 bits (164), Expect = 2e-88
Identities = 170/172 (98%)
Strand = Plus / Minus
Query: 1170 ggtggcactttgaagatctacgggtcgtccctgtgtccggacgttccatacaagacgtta 1229
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 422 ggtggcactttgaagatctacgggtcgtccctgtgtccggacgtgccatacaagacgtta 363
Query: 1230 ttgttatctgtgggcgacacggcggccggagtcgtccgtgagatgctcgacaaatacggt 1289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttgttatctgtgggcgacacggcggccggagtcgtccgtgagatgctcgacaaatacggt 303
Query: 1290 ttgtcgcgacacgacccgcaacaattctgcatcgtccaggtacatcactaca 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgtcgcgacacgacccgcaacaattctgcatcgtccaggtacatcactaca 251
Score = 230 bits (116), Expect = 7e-60
Identities = 116/116 (100%)
Strand = Plus / Minus
Query: 1053 gagacgtcgttcacccgcagcatcagtaaccctgaagccgtcatgagacgtcgaagacaa 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gagacgtcgttcacccgcagcatcagtaaccctgaagccgtcatgagacgtcgaagacaa 734
Query: 1113 cagaaactagagaggaagctgcagcagttccgctccaaagacggtggacctgacac 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 cagaaactagagaggaagctgcagcagttccgctccaaagacggtggacctgacac 678
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 210,839
Number of extensions: 4279
Number of successful extensions: 4279
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4279
Number of HSP's successfully gapped: 4
Length of query: 2128
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2111
Effective length of database: 8,119,229
Effective search space: 17139692419
Effective search space used: 17139692419
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)