BLASTN 2.2.24 [Aug-08-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DPGLEAN15088 (UTR included)
         (2893 letters)

Database: est 
           9484 sequences; 8,280,457 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BF14_729_C3                                                            72   5e-12
BF01025A1D01                                                           68   9e-11

>BF14_729_C3
          Length = 2041

 Score = 71.9 bits (36), Expect = 5e-12
 Identities = 58/66 (87%), Gaps = 7/66 (10%)
 Strand = Plus / Minus

                                                                        
Query: 228  aactacatactcccgacgtttcggttactttttactttgcagcaaccgtgatcacgggca 287
            ||||||||| |||||||||||||||||||||       ||||||||||||||||||||||
Sbjct: 1647 aactacataatcccgacgtttcggttacttt-------gcagcaaccgtgatcacgggca 1595

                  
Query: 288  gacgag 293
            ||||||
Sbjct: 1594 gacgag 1589


>BF01025A1D01
          Length = 764

 Score = 67.9 bits (34), Expect = 9e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 259 ttactttgcagcaaccgtgatcacgggcagacgagatt 296
           ||||||| ||||||||||||||||||||||||||||||
Sbjct: 449 ttacttttcagcaaccgtgatcacgggcagacgagatt 486


  Database: est
    Posted date:  Jul 14, 2011  2:25 PM
  Number of letters in database: 8,280,457
  Number of sequences in database:  9484
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 378,098
Number of extensions: 10262
Number of successful extensions: 10262
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 10262
Number of HSP's successfully gapped: 2
Length of query: 2893
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 2875
Effective length of database: 8,109,745
Effective search space: 23315516875
Effective search space used: 23315516875
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)