BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15404 (UTR included)
(3427 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3234_C1 1239 0.0
>BF14_3234_C1
Length = 1249
Score = 1239 bits (625), Expect = 0.0
Identities = 628/629 (99%)
Strand = Plus / Plus
Query: 2799 gaggatgataatgatgatttgcaaccctctacaacgaccacatctagtgatccgctgtca 2858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gaggatgataatgatgatttgcaaccctctacaacgaccacatctagtgatccgctgtca 61
Query: 2859 ccaccactgatccagcaacccgattcaaccaacaataaccatcagatacgacccggttac 2918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ccaccactgatccagcaacccgattcaaccaacaataaccatcagatacgacccggttac 121
Query: 2919 cagttgtagaatttaatactcctgctccttcgtgacagactaacttttgtgtgggacttt 2978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 cagttgtagaatttaatactcctgctccttcgtgacagactaacttttgtgtgggacttt 181
Query: 2979 ttaggaaacttataaaaactctttggttgaagtgacttgttagttgttctgacaaaaata 3038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttaggaaacttataaaaactctttggttgaagtgacttgttagttgttctgacaaaaata 241
Query: 3039 tactgaacaggcgagaaagtaaatattacaatgttttaaaataatgcaattaattataac 3098
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tactgaacaggcgagaaagtaaatattacaatgttttaaaataatgcaattaattataac 301
Query: 3099 aattatttattgatatttgttaagtggagcagctatatttaagtggaatttaaatcttcc 3158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aattatttattgatatttgttaagtggagcagctatatttaagtggaatttaaatcttcc 361
Query: 3159 ttaaaaattatttttaacatttatgcttattactaagaaatttccaaatatatatcggac 3218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttaaaaattatttttaacatttatgcttattactaagaaatttccaaatatatatcggac 421
Query: 3219 ggtattatataatatctgtgatagttgacagtggcagatttgaagacaagattttagcga 3278
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ggtattatataatatctgtgatagttgacagtggcagatttgaagacaagattttagcga 481
Query: 3279 attcatttggttctttattaaaatcttttaagaatactcagtcactatatatgtatctag 3338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 attcatttggttctttattaaaatcttttaagaatactcagtcactatatatgtatctag 541
Query: 3339 tttcataaatcctaaaggcatgtacatgttttataatcaagttatgtacattttgccttt 3398
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 542 tttcataaatcctaaaggcatgtacatgttctataatcaagttatgtacattttgccttt 601
Query: 3399 tttatgtcaatcatataagtgagtatgaa 3427
|||||||||||||||||||||||||||||
Sbjct: 602 tttatgtcaatcatataagtgagtatgaa 630
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 374,123
Number of extensions: 7249
Number of successful extensions: 7249
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 7249
Number of HSP's successfully gapped: 1
Length of query: 3427
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 3409
Effective length of database: 8,109,745
Effective search space: 27646120705
Effective search space used: 27646120705
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)