BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15449 (UTR included)
(2140 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01037B1H08 94 1e-18
BF01056B1D02 82 4e-15
BF01023A2A12 74 1e-12
BF01029B2F12 68 6e-11
>BF01037B1H08
Length = 758
Score = 93.7 bits (47), Expect = 1e-18
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 51 atacgtcagggcgcgggttcgaaacctggcaagtacaaatgtgatcttttccgaatcata 110
|||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 106 atacgtgaaggcgcgggttcgaaacctggcaagtaccaatgtgatcttttccgagtcata 165
Query: 111 tgt 113
|||
Sbjct: 166 tgt 168
>BF01056B1D02
Length = 778
Score = 81.8 bits (41), Expect = 4e-15
Identities = 57/61 (93%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 53 acgtcagggcgcgggttcgaaacctggcaagtacaaatgtgatcttttccgaatcatatg 112
|||| |||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 493 acgtgagggcgcgggtt-gaaacctggcaagtaccaatgtgatcttttccgagtcatatg 551
Query: 113 t 113
|
Sbjct: 552 t 552
>BF01023A2A12
Length = 723
Score = 73.8 bits (37), Expect = 1e-12
Identities = 56/61 (91%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 53 acgtcagggcgcgggttcgaaacctggcaagtacaaatgtgatcttttccgaatcatatg 112
|||| |||||||||||| |||||||||||||||| ||||||||||||||||| ||| |||
Sbjct: 88 acgtgagggcgcgggtt-gaaacctggcaagtaccaatgtgatcttttccgagtcacatg 146
Query: 113 t 113
|
Sbjct: 147 t 147
>BF01029B2F12
Length = 749
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Minus
Query: 58 agggcgcgggttcgaaacctggcaagtacaaatgtgat 95
||||||||||||||||||||||||||||| ||||||||
Sbjct: 669 agggcgcgggttcgaaacctggcaagtaccaatgtgat 632
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 284,621
Number of extensions: 7133
Number of successful extensions: 7133
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 7131
Number of HSP's successfully gapped: 4
Length of query: 2140
Length of database: 8,280,457
Length adjustment: 17
Effective length of query: 2123
Effective length of database: 8,119,229
Effective search space: 17237123167
Effective search space used: 17237123167
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 34 (67.9 bits)