BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15550 (UTR included)
(4246 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF01051A2B10 1499 0.0
>BF01051A2B10
Length = 796
Score = 1499 bits (756), Expect = 0.0
Identities = 778/786 (98%)
Strand = Plus / Plus
Query: 2330 gagacgagtgagagaccaggaggaggagctggacgagctggccggacagatacagttatt 2389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 gagacgagtgagagaccaggaggaggagctggacgagctggccggacagatacagttatt 70
Query: 2390 ggagagttctaagcttcgcctggagatgcttttggagcagcagcggaaggaggctcgcct 2449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 ggagagttctaagcttcgcctggagatgcttttggagcagcagcggaaggaggctcgcct 130
Query: 2450 ggaagctgccgctagagacgacgagatggaagaaactagagcgaacgcctctaagaaact 2509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ggaagctgccgctagagacgacgagatggaagaaactagagcgaacgcctctaagaaact 190
Query: 2510 taaaatgctggagagtcagctggagagcgagcattcagagcggtcgctgctcctccgaga 2569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 191 taaaatgctggagagtcagctggagagcgagcattcagagcggtcgctgctcctccgcga 250
Query: 2570 gcgacacgagctggagagacggctggcagcgctggaggaagccgctcgccaggagacaca 2629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 gcgacacgagctggagagacggctggcagcgctggaggaagccgctcgccaggagacaca 310
Query: 2630 tgaacagggacagctggtcattagacttaagagggatgtgaaacgttaccgcgccctgct 2689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgaacagggacagctggtcattagacttaagagggatgtgaaacgttaccgcgccctgct 370
Query: 2690 gcgagacgctcagacgatgttggaacagaaggaaaaggaaggtggagggaagactcagat 2749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gcgagacgctcagacgatgttggaacagaaggaaaaggaaggtggagggaagactcagat 430
Query: 2750 aagacatttgaaaaaccaggtggaagacttggagttgtcgctccgcgctgctaacaaggc 2809
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 431 aagacatttgaaaaaccaggtggaagacctggagttgtcgctccgcgctgctaacaaggc 490
Query: 2810 acgctcgacagctgagagtgaggcgagcgaggcgaccgcagccctagaggagaccgcgcg 2869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acgctcgacagctgagagtgaggcgagcgaggcgaccgcagccctagaggagaccgcgcg 550
Query: 2870 cgcccgaaacgaggccgtggagagagcgcatgccgccacgagggacgccgccgccgcacg 2929
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 cgcccggaacgaggccgtggagagagcgcatgccgccacgagggacgccgccgccgcacg 610
Query: 2930 cgcagccctagacgacgctgaggaggaagccgccgagctgctgaagaagtatcgggcgag 2989
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 611 cgcagccctagacgacgctgaggaggaagccgctgagctgctgaagaagtatcgggcgag 670
Query: 2990 tacgagcgcgctgtgcgccgctcaggcagccgcccgcgaggctgagtcccgagcggaggc 3049
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 671 tacgagcgcgctgtgcgccgctcaggcagccgcccgcgaggctgnntcccgagcggaggc 730
Query: 3050 tgcggctgaagaagcacgtcaggcgcgagagaaactcactgagatgaccactagactggc 3109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 731 tgcggctgaagaagcacgtcaggcgcgagagaaactcactgagatgaccactagactagc 790
Query: 3110 acacgc 3115
||||||
Sbjct: 791 acacgc 796
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 315,494
Number of extensions: 5173
Number of successful extensions: 5173
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 5169
Number of HSP's successfully gapped: 1
Length of query: 4246
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 4228
Effective length of database: 8,109,745
Effective search space: 34288001860
Effective search space used: 34288001860
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)