BLASTN 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DPGLEAN15628 (UTR included)
(5527 letters)
Database: est
9484 sequences; 8,280,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF14_3059_C1 1604 0.0
>BF14_3059_C1
Length = 892
Score = 1604 bits (809), Expect = 0.0
Identities = 868/891 (97%), Gaps = 15/891 (1%)
Strand = Plus / Plus
Query: 1539 aaggtggacacactacaggagctgttgatgcgcgagggtgtggagccggagacggtcgtc 1598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aaggtggacacactacaggagctgttgatgcgcgagggtgtggagccggagacggtcgtc 61
Query: 1599 tctggggacccagaccagcaattactgactgtgttaaaggtatctcaagaggaacgtcgt 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 62 tctggggacccagaccagcaattactgactgtgttaaaggtatctcaagaggaccgtcgt 121
Query: 1659 ctgttactgacgaaacaggagcaactggaagccgatctgaccgagtcgaaggccgcgctg 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 ctgttactgacgaaacaggagcaactggaagccgatctgaccgagtcgaaggccgcgctg 181
Query: 1719 gaggagaaaaccaaagaaatagaaaccctgtctgaaagaataaggtctctggagtgtagt 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gaggagaaaaccaaagaaatagaaaccctgtctgaaagaataaggtctctggagtgtagt 241
Query: 1779 gtggagcgcgcggagtctgagcgcgctaggtgggagcaggaggcgggggcggcgagggat 1838
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gtggagcgcgcagagtctgaacgcgctaggtgggagcaggaggcgggggcggcgagggat 301
Query: 1839 gccgcggccgcgagacagcatcaggtcaccacgctcggggaactgctggcagccgctcag 1898
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gctgcggctgcgagacagcatcaggtcaccacgctcggggaactgctggcagccgctcag 361
Query: 1899 gctcagttggccggtgcggcagagggcgctgcggaggcg---------------gcggcg 1943
|||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 362 gctcagttggccggtgcggcagagggcgctgcggcggcggagtgcgctgcggcggcggcg 421
Query: 1944 gctcggcgcgacgcggacgctgctgcggcgcgggctcacacactcgccgagaggcttgct 2003
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 422 gctcggcgcgacgcggacgctgctgcggcgagggcccacacactcgccgagaggcttgct 481
Query: 2004 catgcacagagacaactagaccgagctcactcggacgctcgcaaactacacgatgatgca 2063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 catgcacagagacaactagaccgagctcactcggacgctcgcaaactacacgatgatgca 541
Query: 2064 ctcgtgtctcgtaacaatgccaagtcgacgatctctgagcttgagttccagctagagcag 2123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 ctcgtgtctcgtaacaatgccaagtcgacgatctctgagcttgagttccagctagagcag 601
Query: 2124 gctcggcaggagaagagcgcccttcagactgagctgcggaccatgcaagagaactgtgct 2183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gctcggcaggagaagagcgcccttcagactgagctgcggaccatgcaagagaactgtgct 661
Query: 2184 gagcttcagatacaagttcaggtagcctctgatgaaaagctgtcactgatgagtcgtgca 2243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gagcttcagatacaagttcaggtagcctctgatgaaaagctgtcactgatgagtcgtgca 721
Query: 2244 ggagaatcgttggcgcgtgctgcggacctcgagaggcagctcgctgacacacgcgccagg 2303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggagaatcgttggcgcgtgctgcggacctcgagaggcagctcgctgacacacgcgccagg 781
Query: 2304 ctcgctactataactagagatagagatagagatgaagcggaatggaagcaattccaaagt 2363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ctcgctactataactagagatagagatagagatgaagcggaatggaagcaattccaaagt 841
Query: 2364 gacttactgatgacggtccgagtagctaacgactttaaaacagaagcccag 2414
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gacttactgatgacggtccgagtagctaacgactttaaaacagaagcccag 892
Database: est
Posted date: Jul 14, 2011 2:25 PM
Number of letters in database: 8,280,457
Number of sequences in database: 9484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Sequences: 9484
Number of Hits to DB: 579,518
Number of extensions: 11294
Number of successful extensions: 11294
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 11292
Number of HSP's successfully gapped: 2
Length of query: 5527
Length of database: 8,280,457
Length adjustment: 18
Effective length of query: 5509
Effective length of database: 8,109,745
Effective search space: 44676585205
Effective search space used: 44676585205
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
X3: 50 (99.1 bits)
S1: 12 (24.3 bits)
S2: 35 (69.9 bits)